Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 0.0e+00 1427.9 685 100.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 0.0e+00 1252.3 678 88.1
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 0.0e+00 1215.7 679 85.7
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 0.0e+00 1212.2 678 85.0
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1204.5 686 85.3
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 0.0e+00 1203.3 678 85.1
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1186.0 682 83.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 0.0e+00 1181.8 697 82.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 0.0e+00 1114.0 680 79.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1096.6 685 79.7
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-307 1058.5 681 76.5
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.1e-303 1046.2 670 74.8
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.1e-302 1042.0 667 75.0
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.8e-301 1038.9 667 74.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.2e-299 1031.9 670 74.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.4e-297 1024.6 686 72.0
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 3.8e-296 1021.1 686 72.0
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-293 1012.3 676 72.3
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 9.1e-290 1000.0 667 71.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 9.1e-290 1000.0 667 71.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.0e-289 998.8 669 71.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.6e-289 998.4 667 71.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.5e-289 997.7 674 71.8
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.1e-271 939.9 676 67.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.5e-271 937.6 687 67.0
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.5e-225 785.4 702 55.3
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 7.3e-223 777.7 678 55.5
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.1e-222 774.2 685 54.6
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 4.0e-221 771.9 669 55.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.4e-220 768.5 677 54.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.3e-219 766.9 679 55.5
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-219 766.5 680 54.0
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 3.8e-219 765.4 683 54.8
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.9e-219 765.0 688 54.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.4e-218 761.5 684 55.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.3e-218 760.8 679 54.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 9.3e-218 760.8 722 52.1
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.1e-217 759.6 686 53.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.3e-216 756.9 669 54.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.7e-216 756.5 680 55.0
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.3e-216 756.1 686 52.9
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.9e-215 753.1 678 53.4
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.5e-215 752.7 673 53.9
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.3e-215 752.3 674 53.6
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.3e-215 752.3 682 53.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.6e-215 751.5 705 53.5
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.1e-214 749.6 662 54.5
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.8e-214 749.2 674 53.4
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.8e-214 749.2 688 52.9
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.8e-214 748.4 688 53.3
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 4.8e-214 748.4 693 53.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 8.1e-214 747.7 679 53.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.0e-213 745.3 687 52.1
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 6.9e-213 744.6 661 53.9
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.5e-212 743.4 658 54.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.6e-212 742.7 661 53.9
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.5e-212 741.9 719 52.4
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.5e-212 741.9 682 52.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 5.8e-212 741.5 693 51.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.8e-212 741.5 687 52.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.8e-212 741.5 691 51.5
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 9.9e-212 740.7 692 52.2
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.2e-211 739.6 735 50.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.2e-211 739.6 691 51.7
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 6.4e-211 738.0 672 53.0
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 5.4e-210 734.9 660 53.8
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 5.4e-210 734.9 676 53.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 7.1e-210 734.6 666 53.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.5e-209 732.3 687 53.0
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.0e-208 730.7 717 50.3
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.0e-208 730.7 722 50.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.3e-208 730.3 688 52.2
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.9e-208 728.8 676 52.4
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 3.9e-208 728.8 687 52.7
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.7e-208 728.0 670 52.7
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 7.4e-207 724.5 687 52.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.7e-206 722.2 674 50.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 4.8e-206 721.8 685 51.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.2e-206 721.5 674 51.9
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.2e-206 721.5 689 51.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.1e-205 720.7 689 51.5
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.8e-205 719.9 672 53.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 6.9e-205 718.0 678 51.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 9.0e-205 717.6 666 51.2
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.6e-204 716.1 671 51.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 5.8e-204 714.9 673 51.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.6e-204 714.5 715 50.2
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.3e-203 713.8 675 51.6
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.2e-203 713.0 661 51.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 4.9e-203 711.8 697 50.4
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.1e-202 710.7 673 51.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.1e-202 710.7 670 51.5
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.3e-200 703.0 665 52.5
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.6e-198 696.8 676 50.4
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.8e-197 693.3 445 78.0
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.8e-197 693.3 676 51.2
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 3.1e-197 692.6 678 50.4
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.1e-197 692.6 684 50.6
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.0e-197 692.2 628 53.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.4e-196 689.1 604 54.5
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 8.4e-195 684.5 860 43.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 4.2e-194 682.2 696 49.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.1e-193 679.9 624 53.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.0e-192 677.6 675 50.5
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-191 672.5 667 51.0
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.3e-191 672.2 676 49.9
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.4e-189 666.4 642 51.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.4e-189 666.4 681 48.6
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.1e-189 666.0 686 50.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.6e-188 662.9 667 50.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 9.4e-186 654.4 594 54.0
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 9.4e-186 654.4 685 47.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.1e-185 653.3 596 52.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.6e-185 652.1 675 48.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.8e-184 650.2 682 47.2
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.9e-184 649.0 683 47.4
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-183 647.1 684 48.1
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.1e-181 639.4 740 43.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.5e-180 635.6 721 46.3
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.4e-178 630.6 667 49.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-175 619.4 724 45.2
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.2e-174 614.8 676 48.8
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.1e-173 612.8 697 47.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-170 603.2 345 82.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 9.4e-170 601.3 683 46.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.6e-159 566.6 692 43.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.3e-159 566.2 691 43.1
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.5e-154 550.8 678 43.5
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.6e-153 547.4 682 43.1
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.0e-152 544.7 544 50.2
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.7e-151 538.9 676 44.5
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.0e-147 528.1 532 49.8
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 4.5e-140 502.7 562 46.1
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.6e-137 494.2 426 53.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 6.0e-132 475.7 551 45.6
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.5e-122 444.5 375 56.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.7e-116 423.7 372 62.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.4e-109 399.4 289 63.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.4e-101 374.8 235 79.6
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 6.6e-99 365.9 396 45.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.0e-95 354.4 231 70.6
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.2e-93 347.1 238 75.2
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.5e-90 337.4 314 49.0
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 3.4e-87 327.0 399 41.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-84 318.5 400 42.2
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 9.6e-82 308.9 549 34.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.1e-81 307.8 176 83.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 3.4e-79 300.4 394 42.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.2e-77 293.9 573 32.3
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.6e-58 231.1 223 56.5
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.0e-55 221.5 146 65.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 4.0e-51 207.2 150 64.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 6.7e-51 206.5 330 37.0
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.1e-48 197.6 219 47.0
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-43 180.3 99 81.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-43 180.3 99 81.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-43 180.3 99 81.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.8e-40 171.8 117 65.0
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 7.7e-39 166.4 119 58.0
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.6e-36 158.7 242 38.4
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 4.6e-23 114.0 211 30.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-23 113.6 134 41.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 8.6e-22 109.8 185 35.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.9e-21 108.6 59 86.4
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.6e-20 105.5 64 81.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-15 89.4 70 51.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 7.8e-15 86.7 45 86.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 7.8e-15 86.7 45 86.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.3e-14 85.1 268 27.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.1e-13 82.8 224 27.7
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 1.7e-09 68.9 44 77.3


User provided reference genes

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