Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 0.0e+00 1405.6 700 100.0
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 0.0e+00 1203.0 701 86.9
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 0.0e+00 1166.4 702 84.5
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 0.0e+00 1152.1 702 83.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 0.0e+00 1143.3 702 82.5
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 0.0e+00 1127.1 712 81.0
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 0.0e+00 1115.1 712 79.9
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1095.9 682 81.7
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1088.6 682 81.2
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 0.0e+00 1082.4 701 79.3
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 6.2e-302 1040.4 703 76.2
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 5.9e-260 901.0 708 64.3
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.3e-251 873.2 510 85.5
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 7.2e-226 787.7 702 56.0
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 8.3e-222 774.2 702 56.7
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 4.1e-221 771.9 707 54.6
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.5e-218 763.5 702 56.1
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 3.0e-216 755.7 708 53.7
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.0e-215 753.1 701 53.8
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.8e-213 746.5 712 53.1
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 4.1e-213 745.3 717 53.7
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 6.6e-211 738.0 707 54.0
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 3.1e-208 729.2 711 52.3
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 4.4e-207 725.3 710 52.1
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.7e-206 723.4 704 53.0
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.4e-205 720.3 700 51.3
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.4e-205 720.3 728 51.6
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.5e-204 715.7 700 50.4
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.0e-203 714.1 728 51.2
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.3e-198 697.2 709 50.2
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.3e-198 697.2 708 50.7
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.7e-198 696.8 712 49.9
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 6.4e-198 694.9 700 50.0
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.1e-197 694.1 761 49.5
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.6e-196 690.3 717 48.5
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 2.5e-194 682.9 702 50.0
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 4.3e-194 682.2 713 49.1
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 3.6e-193 679.1 693 48.8
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 6.8e-192 674.9 715 48.1
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.3e-190 670.6 699 50.4
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 2.9e-190 669.5 700 50.3
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 8.4e-190 667.9 708 48.0
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 3.2e-189 666.0 705 48.9
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 3.5e-188 662.5 706 47.7
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.0e-187 661.0 712 48.0
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 1.9e-186 656.8 709 48.8
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.3e-186 655.6 709 47.5
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 9.6e-186 654.4 702 48.0
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.6e-185 653.7 706 49.3
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 3.6e-185 652.5 704 48.9
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 4.7e-185 652.1 701 48.2
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.4e-184 650.6 705 46.8
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 5.2e-184 648.7 710 45.9
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 2.0e-183 646.7 675 51.6
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.6e-183 646.4 709 46.1
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 4.4e-183 645.6 660 49.1
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 2.7e-180 636.3 709 47.1
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 6.6e-179 631.7 696 48.7
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.3e-178 629.0 697 48.6
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 5.6e-178 628.6 390 82.8
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 2.4e-176 623.2 704 46.4
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 6.9e-176 621.7 707 47.8
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.0e-175 620.2 704 47.6
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 4.5e-175 619.0 701 48.2
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.3e-174 617.5 703 47.8
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.9e-173 613.6 610 51.5
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 3.9e-171 605.9 697 46.8
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 3.9e-171 605.9 591 54.7
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 9.6e-170 601.3 711 46.4
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 6.9e-168 595.1 703 44.5
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.5e-162 577.4 507 54.6
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.8e-161 572.4 697 44.3
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.4e-159 566.2 744 43.3
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 1.0e-158 564.7 706 44.9
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.1e-157 561.2 600 47.2
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 2.7e-156 556.6 711 43.7
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 3.0e-155 553.1 470 57.7
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 5.1e-155 552.4 509 51.9
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 3.8e-150 536.2 461 56.2
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 2.1e-148 530.4 441 60.1
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.7e-148 530.0 538 53.2
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 1.0e-134 485.0 401 58.6
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 6.1e-132 475.7 609 45.6
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.8e-131 474.2 559 44.0
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 5.0e-126 456.1 483 51.1
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 2.5e-125 453.8 442 52.5
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 4.7e-124 449.5 619 40.2
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 5.3e-120 436.0 646 40.2
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.9e-117 427.6 436 53.7
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.2e-114 418.3 548 42.0
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 1.3e-113 414.8 531 43.1
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 1.1e-112 411.8 502 46.8
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 3.8e-102 376.7 501 40.5
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 2.5e-101 374.0 841 30.9
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 5.7e-98 362.8 672 34.8
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 5.6e-85 319.7 699 31.9
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.6e-84 318.2 703 31.9
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 1.7e-81 308.1 772 28.8
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 5.4e-80 303.1 740 29.6
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.6e-76 291.6 701 31.2
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.1e-76 291.2 230 60.4
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.4e-74 283.9 385 41.8
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.2e-71 275.4 595 31.4
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 2.4e-64 251.1 209 57.9
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 1.1e-59 235.7 187 58.3
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.5e-45 188.7 322 37.0
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 6.9e-43 179.9 159 50.9
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 2.5e-40 171.4 220 44.5
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-36 156.8 307 33.9
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 2.2e-33 148.3 131 51.1
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.1e-31 140.2 146 47.3
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 6.7e-30 136.7 148 48.6
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.3e-28 132.5 110 58.2
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 3.7e-28 131.0 204 38.2
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 2.9e-25 121.3 195 40.0
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 7.2e-24 116.7 89 57.3
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 1.6e-23 115.5 193 37.3
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.7e-20 105.5 247 30.4
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.0e-14 86.3 132 37.1
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 2.0e-13 82.0 46 73.9
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 3.7e-12 77.8 43 67.4
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.8e-11 75.5 59 50.8
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 1.0e-06 59.7 332 24.7
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 1.4e-06 59.3 330 24.2
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 2.3e-06 58.5 68 48.5
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 3.0e-06 58.2 400 22.8
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 5.2e-06 57.4 326 23.9
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 6.7e-06 57.0 426 22.5


User provided reference genes

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