Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 0.0e+00 1431.8 731 100.0
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 3.4e-258 895.2 786 63.5
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 1.4e-240 836.6 817 58.8
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 4.3e-205 718.8 746 58.7
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 4.3e-205 718.8 745 58.7
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 2.5e-192 676.4 741 56.7
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 5.1e-190 668.7 741 56.7
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 6.1e-183 645.2 737 55.5
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 8.1e-119 432.2 367 61.9
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 1.7e-116 424.5 761 40.6
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 2.3e-97 360.9 237 75.9
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 3.9e-73 280.4 316 47.5
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 8.7e-73 279.3 317 47.9
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 2.1e-71 274.6 318 48.1
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 1.1e-70 272.3 393 39.4
Carub.0003s2362 Capsella rubella HOM05D008307 ORTHO05D010374 3.1e-70 270.8 336 50.3
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 5.0e-68 263.5 326 45.1
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 3.9e-65 253.8 299 44.1
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 3.7e-63 247.3 303 41.9
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 2.4e-62 244.6 710 29.4
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 3.1e-62 244.2 709 31.0
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.2e-61 242.3 303 41.3
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.4e-59 235.3 294 43.2
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 1.6e-58 231.9 336 42.0
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 3.0e-57 227.6 759 27.7
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 1.5e-56 225.3 299 41.1
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 2.0e-56 224.9 299 40.1
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.7e-55 221.9 255 43.9
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 6.3e-55 219.9 283 42.8
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 1.1e-54 219.2 299 38.8
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 4.1e-54 217.2 300 40.7
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 1.5e-53 215.3 719 29.5
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 2.0e-53 214.9 257 46.3
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 3.4e-53 214.2 300 40.0
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 3.8e-52 210.7 312 37.5
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 1.9e-51 208.4 205 52.7
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 2.5e-51 208.0 302 40.1
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.1e-50 204.9 409 33.3
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 7.9e-50 203.0 302 37.4
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 5.2e-49 200.3 213 44.1
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 4.4e-48 197.2 284 37.7
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.3e-47 195.7 293 37.2
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 6.3e-47 193.4 308 37.3
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 8.2e-47 193.0 362 34.5
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 2.9e-44 184.5 256 41.8
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 1.6e-34 152.1 275 35.6
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 8.8e-33 146.4 199 40.7
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 4.1e-30 137.5 173 45.7
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 1.9e-27 128.6 139 43.9
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 9.5e-27 126.3 252 35.7
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 6.1e-26 123.6 252 34.9
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 5.9e-21 107.1 167 41.9
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.1e-19 102.8 187 29.9
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 2.0e-16 92.0 316 24.4
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 6.4e-15 87.0 198 30.3
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.3e-12 78.6 156 32.1
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 2.8e-10 71.6 311 22.2
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 2.3e-09 68.6 204 25.0
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.7e-07 62.4 147 23.8
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 3.7e-07 61.2 146 28.8


User provided reference genes

Program Settings