Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 0.0e+00 1494.6 743 100.0
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 0.0e+00 1369.4 742 91.8
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 0.0e+00 1363.2 743 91.0
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 0.0e+00 1349.0 745 89.8
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 0.0e+00 1347.0 743 89.9
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 0.0e+00 1300.4 733 88.8
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 0.0e+00 1248.4 750 83.5
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 0.0e+00 1244.6 749 82.9
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 0.0e+00 1243.0 752 82.8
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 0.0e+00 1242.3 747 83.1
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 0.0e+00 1235.3 731 84.3
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 0.0e+00 1166.8 738 78.9
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.3e-297 1026.2 738 73.7
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 4.8e-268 927.9 722 62.7
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 6.2e-268 927.5 756 60.7
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 3.1e-267 925.2 706 63.6
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 5.3e-267 924.5 706 63.5
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.2e-266 923.3 712 63.2
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.5e-266 922.9 729 61.9
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 5.8e-266 921.0 704 63.4
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-264 916.4 702 64.2
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 2.4e-264 915.6 703 63.0
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.0e-262 910.2 742 60.6
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.7e-262 909.4 753 61.0
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.9e-261 906.0 728 61.7
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.9e-261 906.0 705 62.0
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.8e-259 899.4 731 60.5
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 9.0e-259 897.1 721 61.6
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 9.9e-258 893.6 701 62.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 6.4e-257 891.0 699 62.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.1e-256 890.2 731 61.6
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 3.2e-256 888.6 704 61.2
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 2.1e-255 885.9 801 55.4
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.7e-255 885.6 707 60.8
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.7e-255 885.6 707 60.8
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.3e-254 882.5 702 62.5
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.6e-252 876.3 721 60.5
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 9.0e-251 870.5 703 61.5
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 9.0e-251 870.5 749 59.1
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 2.6e-250 869.0 717 61.5
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 4.5e-250 868.2 721 60.5
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 5.8e-250 867.8 693 60.6
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.2e-249 865.9 718 60.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.9e-249 865.5 705 61.8
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.3e-246 855.9 730 58.9
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.5e-245 853.2 741 58.8
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.3e-244 850.1 724 59.3
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.1e-243 847.0 673 61.4
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 2.0e-242 842.8 700 60.9
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.0e-241 840.5 706 58.4
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.5e-240 835.9 727 58.3
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 9.3e-240 833.9 720 58.8
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.6e-239 833.2 727 57.8
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.6e-239 833.2 723 59.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.7e-239 832.4 694 60.5
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 3.6e-239 832.0 706 57.9
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 7.9e-239 830.9 709 57.4
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.8e-238 829.7 727 57.5
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.1e-237 827.0 737 57.8
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 3.7e-236 822.0 721 57.0
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 8.2e-236 820.8 712 57.9
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 5.9e-234 814.7 741 56.4
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.0e-230 802.4 719 57.9
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 5.1e-230 801.6 606 62.5
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.3e-227 791.6 714 56.7
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 5.3e-227 791.6 701 57.2
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 5.9e-226 788.1 725 55.7
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.0e-225 787.3 743 54.8
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 8.5e-225 784.3 725 55.3
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 1.3e-220 770.4 725 54.6
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 4.5e-218 761.9 716 55.3
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 5.9e-218 761.5 708 55.4
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 7.7e-218 761.1 704 55.5
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.5e-216 756.9 711 56.1
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.4e-216 754.2 700 54.7
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.2e-215 753.8 621 60.5
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 5.2e-214 748.4 701 54.2
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 2.6e-213 746.1 728 50.8
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 4.1e-211 738.8 671 55.3
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 7.7e-210 734.6 763 51.6
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.2e-209 733.0 679 54.5
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 2.3e-206 723.0 738 50.4
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 9.8e-205 717.6 729 50.3
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.4e-203 713.8 663 54.6
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 7.0e-203 711.4 645 56.1
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.3e-201 707.2 740 51.9
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 6.5e-201 704.9 732 50.4
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 4.2e-200 702.2 724 51.0
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.6e-199 700.3 743 50.3
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 3.5e-194 682.6 695 51.8
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 6.8e-190 668.3 550 59.1
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 6.8e-190 668.3 634 53.3
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 3.2e-179 632.9 745 46.2
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.7e-178 629.8 730 45.5
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.3e-176 622.9 603 53.6
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.5e-165 587.4 481 58.6
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.4e-163 580.9 723 45.9
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 2.5e-152 543.5 640 49.1
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 6.9e-142 508.8 531 52.7
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.0e-137 495.0 360 64.7
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.0e-132 478.4 433 56.4
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.1e-118 431.8 743 35.0
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 9.1e-118 428.7 662 38.8
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 3.8e-116 423.3 822 35.9
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.0e-113 415.2 646 37.2
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 3.1e-110 403.7 760 34.6
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 7.2e-107 392.5 731 34.2
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.7e-100 371.3 772 33.0
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 7.2e-99 365.9 788 32.9
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.6e-96 357.5 366 48.9
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.6e-90 338.2 345 52.5
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.3e-84 318.5 334 51.5
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.4e-72 277.3 287 50.9
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 5.4e-62 243.4 560 31.8
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 9.5e-59 232.6 190 56.8
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 8.9e-57 226.1 178 64.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-55 221.9 138 74.6
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.5e-53 214.2 342 38.3
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.4e-49 202.2 166 55.4
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 4.0e-49 200.7 175 57.1
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.2e-40 172.6 500 28.2
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.5e-35 154.8 91 80.2
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.6e-29 134.0 162 40.1
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.4e-25 121.7 104 55.8
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.5e-19 102.4 123 47.2
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 3.8e-15 87.8 395 24.6
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 7.9e-13 80.1 82 45.1
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 5.7e-11 73.9 80 45.0
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 8.2e-10 70.1 80 41.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.9e-07 61.6 72 50.0
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 6.5e-07 60.5 47 57.4
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.4e-06 59.3 49 59.2
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.9e-06 58.9 129 34.1
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.2e-06 58.2 87 41.4


User provided reference genes

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