Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 2044.2 1061 100.0
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1905.2 1062 93.4
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1895.6 1062 93.4
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1890.9 1062 93.5
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1870.1 1062 92.5
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1855.1 1063 91.2
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1848.6 1078 89.4
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1848.2 1078 89.4
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1845.1 1062 91.2
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1819.7 1097 87.3
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1818.9 1097 87.4
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1812.7 1063 89.3
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1809.7 1082 87.7
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1796.6 1050 89.7
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1783.1 1082 86.7
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1770.0 1062 87.9
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1755.0 1056 87.1
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1754.6 1082 85.5
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1729.9 1062 84.2
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1728.8 1082 84.5
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1703.3 1067 84.4
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1518.8 1074 73.6
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1516.1 1091 72.2
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1508.8 1082 72.0
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1508.4 1073 73.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1503.8 1081 72.4
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1503.8 1075 73.3
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1503.0 1075 72.7
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1498.8 1082 72.7
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1492.6 1081 71.5
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1491.5 1075 71.5
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1488.8 1085 71.1
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1082 71.1
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1475.7 1084 70.5
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1474.1 1079 70.6
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1473.0 1076 71.7
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1473.0 1076 71.6
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1076 71.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1471.1 1076 70.9
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1468.0 1076 71.7
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1464.5 1090 71.2
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1463.4 1077 71.4
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1461.8 1084 70.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1459.9 1072 70.4
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1459.5 1074 70.1
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1450.6 1075 70.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1449.9 1084 69.6
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1448.7 1084 69.7
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1447.6 1082 70.8
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1446.4 1073 71.2
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1445.3 1029 73.4
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1440.2 1076 70.4
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1439.1 1076 69.6
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1438.3 1076 70.4
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1437.6 1046 71.8
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1435.2 1085 68.8
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1434.5 1076 69.6
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1434.1 1070 70.6
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1433.3 1076 70.0
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1429.1 1074 70.0
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1427.9 1071 70.0
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1427.5 1071 69.9
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1423.7 1073 69.4
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1418.7 1080 69.0
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1415.6 1081 68.0
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1413.3 1082 68.7
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1410.6 1081 68.8
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1403.7 1152 65.9
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1383.2 1083 66.7
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1381.3 1069 68.8
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1379.8 1083 67.4
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1377.1 1116 66.7
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1376.3 1082 67.2
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1370.9 1098 65.8
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1356.3 1086 66.2
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1337.0 1075 66.5
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1315.4 1072 64.9
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1304.3 1098 63.9
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1303.1 1073 64.8
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1300.4 1183 62.0
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1298.5 993 69.6
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1291.6 1074 64.4
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1286.6 1132 63.6
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1275.0 1077 63.5
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1275.0 939 70.3
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1269.2 1090 63.4
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1268.8 1007 67.6
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1261.9 1113 62.4
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1255.4 1074 63.8
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1253.0 1157 61.0
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1234.6 1106 61.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1219.1 1177 59.8
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1213.0 1104 59.9
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1208.7 1074 61.4
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1204.1 1047 62.9
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1203.7 1076 59.2
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1191.0 1073 59.1
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1186.0 1074 58.8
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1171.4 1065 60.5
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1167.9 1024 61.0
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1157.1 1070 60.2
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1140.6 1064 61.0
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1128.6 864 67.7
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1093.6 1078 57.7
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1088.2 1261 51.9
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1087.0 738 74.8
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 7.4e-299 1030.8 913 60.7
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.3e-290 1001.1 908 60.8
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 7.0e-289 997.7 558 91.2
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 1.6e-277 959.9 726 69.8
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 8.6e-271 937.6 1086 48.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.2e-266 922.9 1102 46.9
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.0e-263 914.1 976 55.3
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.0e-247 860.9 1090 45.2
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 6.8e-244 848.2 832 57.2
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 3.4e-243 845.9 633 71.6
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 2.7e-232 809.7 1057 44.5
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.3e-230 802.7 1089 42.9
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.2e-208 731.1 781 56.6
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 6.7e-207 725.3 423 90.1
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.1e-206 724.5 567 68.1
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.7e-205 719.5 582 67.0
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.8e-197 693.3 575 65.4
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 3.4e-195 686.4 522 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 6.3e-181 639.0 808 46.2
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 2.2e-178 630.6 708 52.0
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 4.1e-172 609.8 1233 34.3
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.7e-170 604.4 844 45.0
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.7e-168 597.0 537 62.4
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 3.1e-156 557.0 389 72.8
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.0e-143 513.5 375 71.7
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.4e-119 435.3 387 59.2
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-117 428.7 351 66.1
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 1.9e-116 424.9 349 65.0
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 7.4e-105 386.3 364 60.7
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 3.4e-102 377.5 325 65.5
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.1e-97 362.5 371 57.1
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 4.6e-91 340.5 280 65.4
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 4.3e-89 334.0 178 94.4
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 9.7e-89 332.8 362 51.1
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 2.8e-88 331.3 274 67.9
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.4e-68 265.8 233 61.4
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.7e-64 252.3 175 73.7
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 4.0e-58 231.1 143 77.6
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.1e-52 213.0 139 74.8
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 2.3e-50 205.3 129 80.6
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.4e-49 201.1 139 70.5
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.8e-48 197.6 108 88.0
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 3.1e-47 194.9 103 95.1
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.5e-44 184.1 167 56.3
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.0e-33 149.1 85 82.4
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.1e-31 143.3 87 75.9
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 4.1e-31 141.4 176 47.7
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 4.1e-31 141.4 111 64.9
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 9.2e-31 140.2 86 73.3
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.6e-30 139.4 86 76.7
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.3e-28 131.7 168 47.6
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.6e-27 128.3 203 33.0
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 8.0e-27 127.1 119 58.0
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-26 125.2 79 70.9
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-26 124.4 92 68.5
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 2.0e-25 122.5 79 72.2
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 2.6e-25 122.1 111 61.3
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.7e-24 119.4 86 70.9
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.3e-21 109.0 86 68.6
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.1e-18 100.1 81 60.5
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 8.3e-16 90.5 84 52.4
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 8.3e-16 90.5 84 52.4
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.0e-13 83.6 104 47.1
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 5.1e-13 81.3 61 63.9
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 5.1e-13 81.3 61 63.9
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 9.5e-12 77.0 49 73.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 3.6e-11 75.1 71 54.9
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.4e-10 72.4 58 63.8
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.2e-09 70.1 48 72.9
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.4e-07 63.2 47 59.6
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.2e-06 60.1 48 68.8


User provided reference genes

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