Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.6e-280 967.2 481 100.0
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.1e-248 862.1 480 89.4
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.2e-232 809.7 482 83.0
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 3.1e-228 795.0 476 81.9
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 9.1e-228 793.5 476 81.9
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 3.4e-227 791.6 476 80.9
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.4e-225 786.2 476 80.9
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.2e-225 785.0 473 81.6
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.2e-224 783.1 473 80.8
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 5.1e-223 777.7 453 83.2
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 1.7e-221 772.7 466 80.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.8e-221 771.9 466 80.3
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 8.2e-221 770.4 467 79.0
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 4.1e-220 768.1 466 80.3
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.5e-219 766.1 467 78.8
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.5e-219 766.1 467 78.8
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.5e-219 766.1 467 78.8
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 9.4e-201 703.7 466 73.0
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.6e-200 703.0 462 72.3
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.1e-200 702.6 466 72.1
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 3.0e-199 698.7 466 71.7
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 5.2e-199 698.0 466 72.1
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.4e-198 695.3 472 70.6
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 4.4e-198 694.9 466 72.5
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.7e-197 693.0 467 71.5
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.7e-197 693.0 468 71.2
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 1.4e-196 689.9 466 70.0
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.4e-196 689.1 466 71.0
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 4.1e-196 688.3 466 70.6
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 5.4e-196 688.0 464 70.7
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.2e-195 686.8 466 70.4
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.7e-195 685.6 466 70.0
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.5e-195 685.3 475 69.1
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 5.9e-195 684.5 466 69.1
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 2.9e-194 682.2 466 69.1
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.8e-194 681.8 466 70.4
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.8e-194 681.8 466 69.5
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 6.6e-194 681.0 466 69.1
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 6.6e-194 681.0 469 70.1
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 6.6e-194 681.0 466 70.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 6.6e-194 681.0 466 69.7
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.6e-194 681.0 466 70.0
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-193 680.2 469 68.9
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.5e-193 679.9 467 69.4
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.9e-193 679.5 472 67.4
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.2e-193 678.3 466 69.7
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 5.5e-193 677.9 466 70.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.2e-192 676.8 466 68.7
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.2e-192 676.8 466 69.5
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.2e-192 676.8 466 68.7
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.6e-192 676.4 464 69.4
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 2.8e-192 675.6 464 70.0
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 2.8e-192 675.6 466 68.0
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.7e-192 674.9 466 68.9
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 4.7e-192 674.9 463 69.3
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 8.0e-192 674.1 463 68.0
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 8.0e-192 674.1 466 69.5
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.0e-191 673.7 466 68.0
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.4e-191 673.3 466 68.9
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.8e-191 672.9 465 66.5
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 2.3e-191 672.5 466 68.9
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 6.8e-191 671.0 465 68.6
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 6.8e-191 671.0 466 68.9
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 2.6e-190 669.1 466 68.2
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 3.4e-190 668.7 466 68.7
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 3.4e-190 668.7 466 69.3
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 4.4e-190 668.3 466 69.5
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 4.4e-190 668.3 469 67.4
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.3e-189 666.8 466 68.2
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.7e-189 665.2 466 69.3
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 3.7e-189 665.2 466 68.5
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 6.3e-189 664.5 466 68.2
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.1e-188 663.7 466 67.0
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 3.1e-188 662.1 467 66.6
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 5.4e-188 661.4 466 67.8
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 5.4e-188 661.4 466 67.8
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.4e-188 661.4 466 67.4
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 7.0e-188 661.0 466 68.2
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 9.2e-188 660.6 469 67.6
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.6e-187 659.8 463 69.3
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 2.0e-187 659.4 466 66.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 2.7e-187 659.1 466 68.0
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.7e-186 656.4 466 67.2
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.7e-186 656.4 466 67.2
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.1e-185 653.7 466 67.4
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.1e-185 653.7 437 71.6
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 7.3e-185 651.0 441 70.7
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 7.3e-185 651.0 465 67.5
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.8e-184 649.0 466 69.3
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 3.7e-181 638.6 445 69.7
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 9.2e-180 634.0 443 66.8
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 6.0e-179 631.3 441 67.6
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.7e-178 629.8 466 65.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 1.7e-178 629.8 473 63.6
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 3.0e-178 629.0 464 63.1
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 5.0e-178 628.2 441 67.8
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 4.0e-175 618.6 441 67.8
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.7e-173 613.2 465 64.9
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 2.4e-172 609.4 466 61.4
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 9.2e-172 607.4 466 62.2
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.2e-172 607.4 470 60.6
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 6.0e-171 604.7 466 63.9
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 4.3e-169 598.6 464 65.3
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 5.6e-169 598.2 463 63.3
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.2e-168 594.7 406 70.4
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 8.9e-167 590.9 466 64.6
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.5e-166 590.1 466 62.7
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.5e-161 572.8 386 71.0
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.5e-153 546.2 441 60.5
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 2.5e-153 546.2 377 69.0
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 8.4e-149 531.2 466 60.1
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.1e-148 530.8 471 54.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.6e-147 526.9 464 52.8
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.3e-144 517.3 452 54.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.9e-138 495.7 470 51.7
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 6.2e-136 488.4 463 49.7
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.1e-132 477.6 326 69.3
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 9.3e-132 474.6 318 72.3
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.2e-131 474.2 339 64.3
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.1e-129 467.6 345 65.8
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.5e-121 440.7 473 48.0
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.9e-117 426.4 293 69.6
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.4e-116 424.1 293 69.6
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.3e-109 401.0 381 54.6
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 3.0e-106 389.8 269 68.4
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 9.7e-97 358.2 536 40.1
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-94 351.3 250 67.6
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 3.6e-91 339.7 615 35.8
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 3.4e-81 306.6 463 39.7
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.5e-78 296.6 474 38.4
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.4e-57 226.9 156 67.9
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 3.0e-45 187.2 242 44.6
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 1.2e-43 181.8 203 47.3
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 6.0e-38 162.9 309 34.6
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.1e-31 142.1 118 55.9
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.2e-31 140.6 108 64.8
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.2e-30 138.7 134 56.0
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 6.6e-29 132.9 87 66.7
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 3.3e-28 130.6 242 36.4
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.0e-25 121.3 75 78.7
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 6.4e-24 116.3 83 69.9
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.2e-17 95.5 68 69.1
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 8.4e-16 89.4 56 71.4
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 4.2e-15 87.0 94 48.9


User provided reference genes

Program Settings