Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.4e-44 182.6 95 100.0
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.3e-29 132.9 94 71.3
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-23 113.2 96 68.8
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.1e-23 113.2 96 68.8
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.7e-21 105.9 96 68.8
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 4.7e-19 97.8 96 63.5
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 8.8e-18 93.6 96 61.5
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 9.8e-17 90.1 96 60.4
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.3e-16 89.7 96 59.4
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.0e-13 80.1 83 49.4
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.9e-13 78.6 84 45.2
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.5e-12 76.3 97 47.4
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.5e-12 76.3 90 47.8
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 3.2e-12 75.1 63 58.7
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.2e-12 74.7 81 53.1
BcaB03g15008 Brassica carinata HOM05D003238 ORTHO05D003571 5.5e-12 74.3 49 67.3
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 5.5e-12 74.3 70 51.4
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 7.2e-12 73.9 71 52.1
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 9.5e-12 73.6 59 57.6
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.2e-11 73.2 73 50.7
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.2e-11 73.2 58 55.2
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.2e-11 73.2 92 51.1
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.1e-11 72.4 85 50.6
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.1e-11 72.4 88 48.9
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 2.8e-11 72.0 83 45.8
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.8e-11 72.0 95 50.5
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 4.7e-11 71.2 86 47.7
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.7e-11 71.2 60 66.7
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 6.1e-11 70.9 87 46.0
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 6.1e-11 70.9 89 50.6
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 6.1e-11 70.9 80 46.2
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 8.0e-11 70.5 74 50.0
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 8.0e-11 70.5 86 47.7
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.0e-10 70.1 84 46.4
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.0e-10 70.1 81 50.6
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 1.4e-10 69.7 92 50.0
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-10 69.7 92 50.0
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-10 69.7 92 50.0
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.4e-10 69.7 79 49.4
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.3e-10 68.9 79 46.8
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 3.0e-10 68.6 90 44.4
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.0e-10 68.6 84 45.2
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.0e-10 68.6 79 48.1
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.0e-10 68.2 84 46.4
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.0e-10 68.2 84 46.4
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.0e-10 68.2 84 46.4
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.0e-10 68.2 81 49.4
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.0e-10 68.2 81 49.4
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 4.0e-10 68.2 93 43.0
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.2e-10 67.8 70 57.1
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.2e-10 67.8 50 60.0
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 5.2e-10 67.8 105 42.9
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 6.8e-10 67.4 95 51.6
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 6.8e-10 67.4 92 48.9
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 6.8e-10 67.4 92 48.9
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 6.8e-10 67.4 92 48.9
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 6.8e-10 67.4 92 48.9
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 6.8e-10 67.4 50 60.0
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.8e-10 67.4 50 60.0
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.8e-10 67.4 50 60.0
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 6.8e-10 67.4 101 42.6
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 6.8e-10 67.4 82 48.8
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-09 66.2 62 62.9
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.0e-09 65.9 54 61.1
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 2.6e-09 65.5 84 45.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.6e-09 65.5 84 45.2
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.6e-09 65.5 50 64.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 3.4e-09 65.1 66 50.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 3.4e-09 65.1 51 66.7
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 3.4e-09 65.1 62 50.0
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.4e-09 65.1 52 67.3
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 4.4e-09 64.7 61 52.5
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.4e-09 64.7 83 49.4
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 4.4e-09 64.7 64 54.7
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 5.7e-09 64.3 95 49.5
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 5.7e-09 64.3 54 64.8
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 7.5e-09 63.9 63 55.6
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 7.5e-09 63.9 65 46.2
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.5e-09 63.9 63 57.1
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.5e-09 63.9 92 43.5
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 7.5e-09 63.9 53 62.3
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 7.5e-09 63.9 59 55.9
Carub.0001s1726 Capsella rubella HOM05D003238 ORTHO05D003571 9.8e-09 63.5 93 45.2
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 9.8e-09 63.5 55 54.5
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.8e-09 63.5 49 63.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.3e-08 63.2 44 63.6
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.3e-08 63.2 44 63.6
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-08 63.2 56 58.9
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-08 63.2 56 58.9
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.3e-08 63.2 111 36.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.3e-08 63.2 49 57.1
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.7e-08 62.8 54 57.4
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.7e-08 62.8 87 41.4
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.2e-08 62.4 50 60.0
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 2.2e-08 62.4 56 51.8
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.8e-08 62.0 56 60.7
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 2.8e-08 62.0 51 64.7
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 3.7e-08 61.6 68 47.1
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.7e-08 61.6 103 37.9
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 3.7e-08 61.6 77 45.5
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.7e-08 61.6 52 55.8
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 4.9e-08 61.2 62 51.6
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 4.9e-08 61.2 52 61.5
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 4.9e-08 61.2 80 45.0
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.9e-08 61.2 52 57.7
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 4.9e-08 61.2 126 39.7
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.9e-08 61.2 59 50.8
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 6.3e-08 60.8 72 44.4
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.3e-08 60.8 54 57.4
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 8.3e-08 60.5 59 54.2
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-07 60.1 84 40.5
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.1e-07 60.1 84 40.5
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.1e-07 60.1 93 43.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 1.1e-07 60.1 52 55.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.1e-07 60.1 49 55.1
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.4e-07 59.7 51 60.8
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.4e-07 59.7 51 62.7
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.8e-07 59.3 67 44.8
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.8e-07 59.3 54 63.0
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.8e-07 59.3 98 38.8
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.8e-07 59.3 60 56.7
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.8e-07 59.3 46 60.9
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.8e-07 59.3 53 56.6
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 2.4e-07 58.9 113 34.5
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.4e-07 58.9 51 60.8
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.4e-07 58.9 62 58.1
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 2.4e-07 58.9 70 44.3
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.1e-07 58.5 83 45.8
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.1e-07 58.5 125 33.6
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.1e-07 58.5 63 55.6
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 3.1e-07 58.5 49 63.3
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 3.1e-07 58.5 61 54.1
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 3.1e-07 58.5 95 38.9
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 3.1e-07 58.5 85 45.9
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 3.1e-07 58.5 52 57.7
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 4.1e-07 58.2 69 42.0
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.1e-07 58.2 58 51.7
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 5.4e-07 57.8 73 46.6
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 5.4e-07 57.8 81 40.7
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 5.4e-07 57.8 60 55.0
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 7.0e-07 57.4 93 41.9
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 7.0e-07 57.4 48 60.4
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 7.0e-07 57.4 52 59.6
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 7.0e-07 57.4 50 62.0
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 7.0e-07 57.4 46 60.9
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 9.2e-07 57.0 81 40.7
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 9.2e-07 57.0 81 40.7
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.2e-06 56.6 49 53.1
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-06 56.6 60 48.3
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-06 56.6 50 62.0
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.6e-06 56.2 59 49.2
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.6e-06 56.2 62 56.5
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 2.0e-06 55.8 54 61.1
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 2.0e-06 55.8 51 54.9
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 2.7e-06 55.5 53 54.7
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 3.5e-06 55.1 85 40.0
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 3.5e-06 55.1 81 42.0
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.5e-06 55.1 59 45.8
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.5e-06 55.1 53 58.5
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.5e-06 55.1 49 59.2
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 4.5e-06 54.7 48 62.5
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 4.5e-06 54.7 63 55.6
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 4.5e-06 54.7 50 58.0
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 5.9e-06 54.3 83 43.4
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 7.8e-06 53.9 97 37.1
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 7.8e-06 53.9 47 51.1


User provided reference genes

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