Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 2.3e-47 192.2 118 100.0
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 3.8e-26 121.7 85 94.1
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.4e-25 119.8 85 92.9
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.3e-23 113.2 89 89.9
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 1.9e-22 109.4 86 86.0
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 1.9e-22 109.4 86 87.2
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 1.9e-22 109.4 86 84.9
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 1.9e-22 109.4 86 86.0
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 6.9e-20 100.9 86 83.7
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 9.0e-20 100.5 85 84.7
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.2e-18 95.9 91 61.5
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 4.9e-18 94.7 87 82.8
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 4.9e-18 94.7 87 82.8
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 5.1e-15 84.7 85 76.5
Aa31LG2G3570 Aethionema arabicum HOM05D001568 ORTHO05D004404 3.3e-14 82.0 80 76.2
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 2.4e-12 75.9 79 54.4
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.8e-11 71.2 84 52.4
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.8e-11 71.2 84 52.4
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.7e-10 69.7 85 45.9
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 2.2e-10 69.3 79 53.2
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.8e-10 68.6 81 53.1
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.8e-10 68.6 84 48.8
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 4.9e-10 68.2 81 51.9
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 8.4e-10 67.4 84 51.2
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.1e-09 67.0 81 48.1
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.4e-09 66.6 84 48.8
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-09 66.6 77 48.1
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.4e-09 66.6 81 48.1
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.9e-09 66.2 81 50.6
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 2.4e-09 65.9 81 45.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.2e-09 65.5 80 52.5
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.2e-09 65.5 81 48.1
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 4.2e-09 65.1 81 60.5
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 4.2e-09 65.1 86 48.8
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 5.5e-09 64.7 41 73.2
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 5.5e-09 64.7 81 46.9
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.5e-09 64.7 81 48.1
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 7.1e-09 64.3 84 47.6
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 7.1e-09 64.3 81 48.1
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.1e-09 64.3 81 49.4
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 9.3e-09 63.9 81 48.1
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 9.3e-09 63.9 114 37.7
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.2e-08 63.5 81 44.4
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.2e-08 63.5 84 44.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.2e-08 63.5 84 44.0
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.2e-08 63.5 81 44.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.2e-08 63.5 81 44.4
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.6e-08 63.2 81 50.6
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.6e-08 63.2 41 70.7
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.6e-08 63.2 84 45.2
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.1e-08 62.8 81 49.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.1e-08 62.8 84 44.0
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.1e-08 62.8 84 46.4
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.1e-08 62.8 84 48.8
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.1e-08 62.8 41 73.2
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 3.5e-08 62.0 85 45.9
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 3.5e-08 62.0 85 45.9
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.6e-08 61.6 84 44.0
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 4.6e-08 61.6 84 44.0
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 6.0e-08 61.2 85 44.7
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 6.0e-08 61.2 83 47.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 7.9e-08 60.8 41 70.7
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.0e-07 60.5 81 45.7
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 2.3e-07 59.3 117 34.2
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 3.0e-07 58.9 88 46.6
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.0e-07 58.9 83 45.8
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 3.9e-07 58.5 82 43.9
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.7e-07 57.8 40 62.5
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.7e-07 57.4 41 65.9
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-06 57.0 84 40.5
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.1e-06 57.0 80 42.5
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 2.5e-06 55.8 37 67.6
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 3.3e-06 55.5 70 47.1
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 3.3e-06 55.5 72 41.7
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.3e-06 55.1 76 47.4


User provided reference genes

Program Settings