Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 1.5e-92 342.8 168 100.0
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 2.4e-79 298.9 158 91.8
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 9.3e-79 297.0 158 91.8
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 1.0e-77 293.5 156 89.7
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 1.0e-77 293.5 152 92.8
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 1.3e-77 293.1 156 88.5
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 3.0e-77 292.0 156 88.5
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 5.1e-77 291.2 156 88.5
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 2.5e-76 288.9 156 87.8
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 2.5e-76 288.9 156 87.8
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 3.7e-75 285.0 155 90.3
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 8.7e-69 263.8 186 70.4
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 4.3e-68 261.5 156 79.5
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 9.0e-66 253.8 168 74.4
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 2.0e-65 252.7 155 78.1
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 1.9e-63 246.1 153 73.9
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 4.2e-63 245.0 155 75.5
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 5.5e-63 244.6 152 77.6
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 5.5e-63 244.6 160 76.2
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 9.3e-63 243.8 155 78.1
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 1.6e-62 243.0 160 75.0
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 2.7e-62 242.3 160 74.4
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 2.7e-62 242.3 160 73.8
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 4.6e-62 241.5 155 74.2
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 4.6e-62 241.5 155 74.2
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 4.6e-62 241.5 160 74.4
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 1.8e-61 239.6 164 69.5
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 1.8e-61 239.6 157 72.6
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 2.3e-61 239.2 168 72.6
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 3.9e-61 238.4 154 74.0
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 5.1e-61 238.0 160 74.4
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 6.7e-61 237.7 155 76.1
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 1.1e-60 236.9 158 72.2
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.1e-60 236.9 152 75.7
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.1e-60 236.9 154 74.7
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.5e-60 236.5 156 73.7
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 1.3e-59 233.4 164 68.9
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 2.2e-59 232.6 168 70.8
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 2.2e-59 232.6 157 71.3
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 2.2e-59 232.6 156 71.8
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 3.7e-59 231.9 153 73.9
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 4.8e-59 231.5 167 68.3
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 4.8e-59 231.5 164 68.3
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 6.3e-59 231.1 157 70.7
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 8.2e-59 230.7 157 71.3
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 1.1e-58 230.3 152 71.7
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 1.1e-58 230.3 153 72.5
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 1.4e-58 229.9 157 70.7
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 2.4e-58 229.2 164 68.3
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 2.4e-58 229.2 170 68.8
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 5.3e-58 228.0 158 70.9
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 6.9e-58 227.6 155 74.2
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 9.0e-58 227.3 158 70.9
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 9.0e-58 227.3 168 70.8
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 1.5e-57 226.5 191 59.7
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 2.0e-57 226.1 153 72.5
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 2.6e-57 225.7 161 65.8
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 3.4e-57 225.3 152 69.1
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 5.9e-57 224.6 157 72.6
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 5.9e-57 224.6 157 72.6
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 5.9e-57 224.6 159 69.8
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 5.9e-57 224.6 153 71.2
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 7.7e-57 224.2 159 68.6
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 1.3e-56 223.4 153 71.2
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.9e-56 222.2 165 68.5
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 5.0e-56 221.5 155 70.3
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 1.4e-55 219.9 159 67.3
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 2.5e-55 219.2 153 70.6
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.2e-55 218.8 165 67.3
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 4.2e-55 218.4 209 56.9
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.2e-55 218.4 164 66.5
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.2e-55 218.4 164 66.5
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 5.5e-55 218.0 153 71.2
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 1.6e-54 216.5 153 70.6
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 6.1e-54 214.5 165 66.1
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 7.9e-54 214.2 153 69.9
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 1.0e-53 213.8 168 66.1
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 1.4e-53 213.4 161 67.1
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 1.4e-53 213.4 153 69.3
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 3.9e-53 211.8 156 65.4
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 5.1e-53 211.5 151 68.9
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 4.3e-52 208.4 159 66.0
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 5.7e-52 208.0 150 66.0
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 4.8e-51 204.9 238 50.4
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 6.3e-51 204.5 157 65.0
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 5.9e-49 198.0 168 63.1
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 2.5e-47 192.6 133 71.4
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 5.5e-47 191.4 150 63.3
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 1.5e-44 183.3 115 72.2
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 2.0e-44 183.0 119 75.6
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 1.3e-43 180.3 114 76.3
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 1.7e-43 179.9 123 72.4
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 2.4e-42 176.0 113 75.2
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.6e-41 173.3 164 57.3
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 8.0e-38 161.0 152 57.9
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 1.8e-37 159.8 110 72.7
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.6e-36 156.0 108 71.3
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 9.7e-36 154.1 89 82.0
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 5.3e-34 148.3 90 76.7
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 2.9e-32 142.5 170 44.1
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 6.5e-24 114.8 75 73.3
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 4.9e-19 98.6 95 56.8
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 6.8e-13 78.2 61 65.6
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 9.8e-12 74.3 81 54.3
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 5.4e-10 68.6 53 62.3
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 2.0e-09 66.6 40 70.0


User provided reference genes

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