Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.9e-124 446.8 228 100.0
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.3e-120 436.4 228 96.5
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.3e-120 435.6 226 96.9
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.0e-120 435.3 228 96.1
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.9e-120 434.9 228 95.6
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 5.1e-120 434.5 226 96.0
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.1e-119 433.3 228 96.1
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-119 433.3 226 96.0
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.9e-119 432.6 228 96.9
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.6e-119 431.0 226 95.6
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-118 429.5 227 96.5
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 6.2e-118 427.6 224 95.1
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.4e-117 425.6 227 96.5
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 5.2e-117 424.5 227 96.5
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.2e-116 423.3 227 96.0
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.5e-111 405.6 228 88.2
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 9.6e-111 403.7 228 88.6
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.3e-110 403.3 228 88.6
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-109 399.8 223 88.8
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.8e-109 399.4 228 88.2
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.4e-109 399.1 223 88.8
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.1e-109 398.7 228 87.7
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 4.4e-108 394.8 206 95.6
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 9.9e-108 393.7 221 88.7
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 9.3e-106 387.1 209 94.3
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 9.3e-106 387.1 209 94.3
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 1.0e-104 383.6 204 95.1
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 2.4e-101 372.5 225 83.6
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.3e-101 371.3 228 79.4
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 9.0e-101 370.5 228 79.4
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 7.6e-100 367.5 205 88.8
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.3e-99 366.7 228 78.9
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.1e-98 363.6 228 77.2
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.4e-98 363.2 228 76.8
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.4e-98 362.5 228 76.3
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 4.2e-98 361.7 204 88.2
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 9.3e-98 360.5 228 78.5
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.1e-97 359.4 228 77.2
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.3e-96 355.9 226 78.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.3e-96 355.9 225 76.0
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.3e-96 355.9 230 75.7
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 3.0e-96 355.5 226 75.7
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 5.1e-96 354.8 226 75.2
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 8.7e-96 354.0 226 77.0
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.9e-95 352.8 224 78.6
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.9e-95 352.8 226 76.1
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 3.3e-95 352.1 223 76.7
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.3e-95 351.7 226 75.2
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 4.3e-95 351.7 226 76.1
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 7.4e-95 350.9 226 74.3
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 9.6e-95 350.5 226 76.1
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 9.6e-95 350.5 226 74.3
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.3e-94 350.1 226 74.8
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.3e-94 350.1 230 74.8
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.3e-94 350.1 226 73.9
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.8e-94 349.0 223 75.8
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 3.7e-94 348.6 226 73.0
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 3.7e-94 348.6 226 74.8
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.2e-94 347.8 226 74.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 6.2e-94 347.8 223 76.2
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 6.2e-94 347.8 230 74.3
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 8.1e-94 347.4 228 75.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.1e-93 345.5 228 75.4
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 6.9e-93 344.4 225 75.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.2e-92 343.6 226 73.5
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.6e-92 342.4 218 76.6
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.6e-92 342.4 231 73.6
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.6e-92 342.4 226 76.1
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 5.8e-92 341.3 228 73.2
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 7.6e-92 340.9 223 74.4
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 225 74.7
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 8.4e-91 337.4 216 76.9
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 8.4e-91 337.4 225 75.1
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 8.4e-91 337.4 225 75.1
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.4e-90 336.7 228 71.9
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.4e-90 336.7 225 74.7
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.5e-90 335.9 225 74.7
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 3.2e-90 335.5 228 70.6
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 9.3e-90 334.0 225 74.2
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 9.3e-90 334.0 232 71.6
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 9.3e-90 334.0 222 73.9
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.6e-89 333.2 224 75.0
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 8.7e-88 327.4 225 72.9
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 8.7e-88 327.4 222 69.4
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.1e-87 327.0 224 73.7
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.5e-87 326.6 227 70.5
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.9e-87 326.2 218 72.0
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 3.3e-87 325.5 237 69.6
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 4.3e-87 325.1 232 69.8
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 4.3e-87 325.1 224 72.3
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 7.4e-87 324.3 224 72.8
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 9.6e-87 323.9 217 72.4
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.3e-86 323.6 228 70.2
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.6e-86 323.2 228 70.2
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.1e-86 322.8 217 71.4
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 2.8e-86 322.4 221 71.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.7e-86 322.0 228 69.7
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 3.7e-86 322.0 221 71.0
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.7e-86 322.0 210 72.4
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 4.8e-86 321.6 221 70.1
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 6.2e-86 321.2 215 73.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 6.2e-86 321.2 217 72.4
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.1e-85 318.9 221 70.1
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 3.1e-85 318.9 205 74.6
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 3.1e-85 318.9 224 69.6
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 3.1e-85 318.9 224 69.6
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-84 317.0 226 69.0
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.6e-84 315.8 224 70.1
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.6e-84 314.3 226 68.6
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.0e-83 313.9 202 75.2
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.3e-83 313.5 204 72.5
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.9e-83 311.6 211 71.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 4.9e-83 311.6 224 69.6
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 8.4e-83 310.8 227 67.4
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.5e-82 309.3 204 75.0
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.6e-81 306.6 208 72.1
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-81 306.6 262 61.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 2.1e-81 306.2 231 66.7
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 6.7e-80 301.2 230 67.0
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 6.7e-80 301.2 207 71.5
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 8.7e-80 300.8 205 72.7
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.5e-79 299.3 222 66.2
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 6.3e-78 294.7 203 71.4
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 9.0e-77 290.8 206 74.8
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 4.5e-76 288.5 243 59.7
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 5.0e-75 285.0 212 66.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 9.4e-74 280.8 213 64.8
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.2e-73 280.4 202 67.8
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.4e-72 276.9 198 69.2
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 6.7e-72 274.6 228 64.5
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.1e-71 273.9 194 70.6
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 3.3e-71 272.3 216 63.9
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-70 270.4 159 86.2
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.3e-70 270.4 186 72.0
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 4.8e-70 268.5 224 61.2
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.2e-70 267.7 208 66.8
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.1e-69 265.8 175 74.3
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.4e-68 262.3 221 62.9
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.2e-67 259.6 183 79.8
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.0e-64 250.8 224 57.1
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 2.6e-63 246.1 225 58.7
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.3e-62 243.8 152 79.6
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.2e-62 243.0 231 58.0
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 3.7e-62 242.3 160 76.2
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.5e-60 236.9 214 58.9
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 5.9e-60 235.0 159 71.1
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.5e-58 229.6 180 66.1
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 2.1e-57 226.5 213 56.3
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.0e-57 224.6 208 59.1
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.0e-56 224.2 221 55.7
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.0e-56 222.6 214 55.1
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 7.4e-55 218.0 222 53.2
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.7e-54 216.9 186 63.4
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.2e-54 214.5 226 53.5
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 9.4e-50 201.1 117 89.7
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.6e-49 200.3 219 59.8
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.8e-48 196.8 211 50.7
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.7e-44 181.4 104 86.5
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 5.5e-42 175.3 238 45.8
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 6.1e-41 171.8 119 80.7
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 5.9e-36 155.2 217 44.2
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.3e-35 153.3 111 65.8
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 5.0e-35 152.1 241 40.2
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.5e-34 150.6 99 73.7
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.2e-33 147.5 232 41.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.0e-28 130.2 123 56.9
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.3e-26 122.5 168 42.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.0e-24 117.9 78 73.1
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 7.8e-20 101.7 79 62.0
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.6e-17 94.0 83 59.0
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 9.8e-15 84.7 204 31.9
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.1e-13 81.3 73 54.8
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 8.6e-11 71.6 105 41.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.3e-08 63.5 40 65.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 2.2e-06 57.0 72 47.2
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 3.7e-06 56.2 69 50.7


User provided reference genes

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