Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 2.5e-133 478.8 244 100.0
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 1.1e-112 410.2 255 85.5
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 4.2e-112 408.3 256 83.6
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 1.5e-109 399.8 253 83.4
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 1.3e-108 396.7 254 83.9
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 2.4e-107 392.5 254 82.7
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 1.2e-106 390.2 254 82.3
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.5e-106 389.8 255 81.2
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 2.6e-106 389.0 255 80.0
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 2.9e-105 385.6 251 81.7
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 3.2e-104 382.1 265 76.6
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 1.0e-102 377.1 245 82.0
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 4.8e-100 368.2 255 74.9
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 3.9e-78 295.4 254 63.0
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 5.5e-72 275.0 193 70.5
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 7.2e-72 274.6 249 61.4
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 7.9e-71 271.2 194 69.6
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 1.7e-68 263.5 191 69.1
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 2.2e-68 263.1 193 68.9
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 2.8e-68 262.7 195 67.2
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 3.7e-68 262.3 264 56.8
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 3.1e-67 259.2 250 57.2
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 5.3e-67 258.5 252 57.1
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 5.3e-67 258.5 193 65.8
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 7.0e-67 258.1 195 66.2
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 7.0e-67 258.1 192 66.7
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 1.5e-66 256.9 227 57.3
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 5.9e-66 255.0 200 62.0
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 1.0e-65 254.2 254 55.5
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 1.3e-65 253.8 258 53.9
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 1.7e-65 253.4 193 67.9
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 2.2e-65 253.1 197 66.5
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 3.8e-65 252.3 184 67.4
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 1.1e-64 250.8 183 66.7
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 5.5e-64 248.4 199 61.8
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 5.5e-64 248.4 198 64.6
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 9.4e-64 247.7 195 64.1
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 1.2e-63 247.3 182 66.5
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 1.2e-63 247.3 187 67.4
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 3.6e-63 245.7 206 58.7
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 3.6e-63 245.7 194 64.4
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 4.7e-63 245.4 250 53.2
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 6.1e-63 245.0 223 57.8
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 6.1e-63 245.0 220 59.1
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 1.0e-62 244.2 207 61.4
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 1.8e-62 243.4 259 54.1
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 1.8e-62 243.4 212 59.9
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.3e-62 243.0 212 59.9
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 3.9e-62 242.3 192 64.6
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 5.2e-62 241.9 195 58.5
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 6.7e-62 241.5 185 67.0
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 8.8e-62 241.1 212 59.4
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 2.0e-61 240.0 255 51.0
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 3.3e-61 239.2 196 64.8
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 3.3e-61 239.2 196 58.7
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 4.4e-61 238.8 193 61.1
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 4.4e-61 238.8 193 61.1
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 1.7e-60 236.9 198 61.6
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 3.7e-60 235.7 196 60.7
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 6.3e-60 235.0 192 64.1
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 1.1e-59 234.2 174 64.9
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 1.4e-59 233.8 193 61.1
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 1.4e-59 233.8 193 61.1
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 1.4e-59 233.8 193 60.1
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.8e-59 233.4 219 53.4
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 1.8e-59 233.4 194 59.8
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 4.1e-59 232.3 190 59.5
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 5.3e-59 231.9 193 60.6
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 7.0e-59 231.5 233 53.2
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 9.1e-59 231.1 226 55.8
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 1.2e-58 230.7 192 58.3
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 3.5e-58 229.2 160 67.5
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 4.5e-58 228.8 185 59.5
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 5.9e-58 228.4 165 65.5
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 5.9e-58 228.4 207 57.0
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 5.9e-58 228.4 178 62.4
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 7.7e-58 228.0 192 58.9
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 7.7e-58 228.0 195 60.0
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 1.0e-57 227.6 204 59.3
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 3.8e-57 225.7 264 48.9
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 3.8e-57 225.7 194 58.8
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.5e-56 223.8 261 50.6
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 4.2e-56 222.2 265 47.9
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 5.5e-56 221.9 171 61.4
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 9.4e-56 221.1 195 61.0
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 9.4e-56 221.1 181 59.7
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 9.4e-56 221.1 166 63.9
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 1.6e-55 220.3 193 58.0
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 2.7e-55 219.5 192 56.8
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.6e-55 219.2 137 77.4
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 5.2e-54 215.3 263 48.7
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 6.7e-54 214.9 193 58.5
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 1.2e-53 214.2 183 60.7
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 2.4e-51 206.5 227 51.5
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 7.7e-50 201.4 244 47.1
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 5.0e-49 198.7 179 55.9
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 2.3e-46 189.9 118 72.0
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 3.0e-46 189.5 296 39.9
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 3.8e-41 172.6 245 40.8
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 8.6e-41 171.4 261 39.8
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 1.9e-40 170.2 133 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 2.0e-37 160.2 188 42.6
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 2.0e-29 133.7 192 34.4
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 1.6e-26 124.0 158 38.6
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 2.7e-26 123.2 193 44.6
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 1.7e-25 120.6 66 80.3
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 2.9e-20 103.2 81 63.0
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 2.4e-19 100.1 105 52.4
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 6.0e-18 95.5 217 29.5
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 1.7e-17 94.0 211 32.2
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-14 84.7 75 53.3
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 1.2e-13 81.3 163 32.5
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 1.6e-10 70.9 105 41.9
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 6.2e-07 58.9 38 71.1
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 1.1e-06 58.2 32 81.2


User provided reference genes

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