Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.4e-123 446.4 256 100.0
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.8e-86 323.2 261 80.8
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 8.3e-71 271.2 261 70.1
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.7e-68 263.5 262 71.0
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.0e-68 262.7 259 66.0
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 3.0e-68 262.7 260 70.8
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 1.1e-67 260.8 261 69.3
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-67 260.0 267 71.5
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 4.7e-66 255.4 258 69.0
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 6.2e-66 255.0 260 72.7
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.1e-65 254.2 261 70.1
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.4e-65 253.8 261 69.7
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 6.0e-61 238.4 225 69.3
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.5e-59 233.0 266 66.5
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 8.1e-58 228.0 268 56.7
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 8.4e-55 218.0 271 58.7
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 7.1e-54 214.9 268 53.4
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 7.1e-54 214.9 268 53.4
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 9.2e-54 214.5 266 65.4
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.2e-53 214.2 268 53.4
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.6e-53 212.2 269 55.0
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.7e-52 210.3 268 53.4
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 2.3e-52 209.9 257 54.5
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.5e-51 207.2 272 56.2
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.6e-51 205.3 267 64.0
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.1e-50 203.4 259 52.9
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.4e-49 199.9 265 59.6
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.4e-49 199.9 268 53.0
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 4.0e-41 172.6 273 52.7
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 5.8e-40 168.7 282 48.6
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.9e-39 166.4 284 51.4
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.4e-38 164.1 270 50.7
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 5.1e-28 129.0 266 42.1
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 2.8e-26 123.2 258 37.6
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 3.7e-26 122.9 232 44.8
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 3.7e-26 122.9 258 37.6
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.4e-25 120.9 258 40.3
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 4.5e-24 115.9 258 39.1
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.2e-23 113.6 259 39.4
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.9e-23 113.2 259 37.5
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 2.9e-23 113.2 259 38.2
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 3.8e-23 112.8 259 39.0
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 4.9e-23 112.5 267 37.1
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 6.5e-23 112.1 259 38.2
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 6.5e-23 112.1 242 39.3
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.1e-22 111.3 261 37.9
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.1e-22 111.3 258 37.6
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.4e-22 110.9 260 38.5
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 3.2e-22 109.8 258 38.0
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.2e-22 109.4 259 37.1
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 5.5e-22 109.0 261 39.1
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 5.5e-22 109.0 237 39.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.2e-21 107.8 265 37.7
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.1e-21 107.1 224 41.5
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.7e-21 106.7 260 37.7
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 3.5e-21 106.3 223 39.9
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.5e-21 106.3 260 37.3
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 6.0e-21 105.5 232 39.2
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.0e-20 104.8 260 37.7
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.3e-20 104.4 258 39.1
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.3e-20 103.6 259 36.7
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.0e-20 103.2 253 37.5
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 6.7e-20 102.1 266 36.8
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 8.7e-20 101.7 265 37.4
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 8.7e-20 101.7 237 38.8
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-19 100.9 253 37.5
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-19 100.9 253 36.4
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-19 100.9 253 36.4
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.5e-19 100.9 246 37.0
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.3e-19 99.8 239 37.2
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.3e-19 99.4 259 35.9
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 5.7e-19 99.0 263 36.1
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 9.7e-19 98.2 199 36.7
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 9.7e-19 98.2 222 38.7
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 9.7e-19 98.2 241 34.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-18 97.8 260 36.2
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.3e-18 97.8 263 34.6
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.6e-18 97.4 223 39.5
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.2e-18 97.1 225 39.1
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 3.7e-18 96.3 266 35.3
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.2e-18 95.1 229 37.6
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-17 94.0 229 37.6
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.8e-17 94.0 258 36.4
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.8e-17 94.0 266 35.3
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.1e-17 93.2 223 38.6
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 3.1e-17 93.2 267 35.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 9.0e-17 91.7 217 38.2
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.2e-16 91.3 260 34.2
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.2e-16 91.3 235 38.3
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.5e-16 90.9 270 34.8
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 7.7e-16 88.6 251 35.9
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.0e-15 88.2 220 36.4
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.7e-15 87.4 221 39.4
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-15 87.4 273 33.0
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.7e-15 87.4 250 34.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.2e-15 87.0 258 32.9
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.1e-14 84.7 252 36.9
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.4e-14 84.3 251 35.1
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.9e-14 84.0 225 33.3
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 9.4e-14 81.6 239 34.7
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.2e-13 81.3 259 33.6
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.1e-13 80.5 203 36.0
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 6.1e-13 79.0 189 37.6
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 7.9e-13 78.6 208 34.1
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.0e-12 78.2 229 35.8
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.0e-12 78.2 221 35.3
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.4e-12 77.8 222 35.1
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.4e-12 77.8 248 33.9
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.4e-12 77.8 249 34.1
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.3e-12 77.0 257 33.1
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 5.1e-12 75.9 269 31.2
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.5e-11 74.3 107 46.7
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.3e-11 73.2 108 44.4
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 9.7e-11 71.6 220 35.0
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 9.7e-11 71.6 264 30.7
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.2e-10 70.5 268 30.6
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.2e-10 70.5 110 47.3
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 2.2e-10 70.5 229 34.1
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.1e-09 68.2 227 34.4
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.4e-09 67.8 223 33.2
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.8e-09 67.4 135 45.2
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-09 67.4 211 32.7
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 5.3e-09 65.9 197 34.5
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 6.9e-09 65.5 126 40.5
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-08 63.9 210 31.9
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.6e-08 63.5 213 32.9
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.7e-08 62.0 146 33.6
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.7e-08 62.0 210 31.4
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.3e-07 61.2 253 30.0
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.3e-07 61.2 225 31.1
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 2.9e-07 60.1 84 50.0
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.5e-07 58.9 204 32.4
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.5e-06 57.0 178 35.4
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 4.2e-06 56.2 84 48.8
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 4.2e-06 56.2 259 27.4
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.5e-06 55.8 189 30.7


User provided reference genes

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