Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 1.3e-143 513.1 257 100.0
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 2.3e-129 465.7 257 91.4
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 1.3e-124 449.9 257 87.9
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 6.5e-124 447.6 257 87.5
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 1.5e-123 446.4 257 87.5
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 2.5e-123 445.7 257 87.2
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 2.5e-123 445.7 257 87.2
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 4.0e-121 438.3 257 86.4
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 5.2e-121 438.0 258 86.0
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 7.5e-120 434.1 258 84.9
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 1.7e-119 433.0 259 86.1
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 4.8e-111 404.8 258 81.4
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 4.1e-102 375.2 262 73.7
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 2.5e-83 312.8 254 64.2
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 3.1e-65 252.7 192 64.1
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 4.0e-65 252.3 242 55.8
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 1.5e-64 250.4 194 63.9
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 7.6e-64 248.1 195 62.6
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 7.6e-64 248.1 228 56.1
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 9.9e-64 247.7 228 56.1
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 1.7e-63 246.9 222 59.5
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 2.2e-63 246.5 202 62.4
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 6.4e-63 245.0 200 62.0
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 8.4e-63 244.6 197 59.4
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 8.4e-63 244.6 197 59.4
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 1.4e-62 243.8 234 54.3
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 1.4e-62 243.8 196 63.8
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.4e-62 243.8 191 62.8
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 1.9e-62 243.4 210 60.5
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 2.4e-62 243.0 190 62.1
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 3.2e-62 242.7 192 61.5
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 3.2e-62 242.7 194 61.3
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 3.2e-62 242.7 196 63.8
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 3.2e-62 242.7 222 58.6
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 4.2e-62 242.3 234 54.3
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 4.2e-62 242.3 192 59.4
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.1e-62 241.5 196 63.3
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.1e-62 241.5 196 63.3
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.1e-62 241.5 228 57.0
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 7.1e-62 241.5 198 58.1
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 9.3e-62 241.1 225 54.7
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 2.1e-61 240.0 228 57.0
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 7.8e-61 238.0 198 60.1
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 7.8e-61 238.0 198 59.1
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 1.0e-60 237.7 233 55.4
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.3e-60 237.3 196 62.8
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 1.7e-60 236.9 227 53.3
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 2.3e-60 236.5 193 60.6
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.3e-60 236.5 196 62.8
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 2.3e-60 236.5 195 60.5
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 3.9e-60 235.7 229 54.1
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 3.9e-60 235.7 191 60.7
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 5.1e-60 235.3 206 58.7
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 5.1e-60 235.3 192 61.5
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 8.7e-60 234.6 214 56.1
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 1.1e-59 234.2 196 61.2
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.9e-59 233.4 197 58.4
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 1.9e-59 233.4 206 58.7
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 2.5e-59 233.0 196 59.7
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.5e-59 233.0 204 56.9
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 7.3e-59 231.5 202 58.4
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 1.3e-58 230.7 273 48.0
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.1e-58 229.9 195 58.5
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 3.6e-58 229.2 246 51.6
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 6.2e-58 228.4 218 51.4
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 8.1e-58 228.0 204 56.9
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 8.1e-58 228.0 242 50.4
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 1.1e-57 227.6 232 53.0
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 1.4e-57 227.3 187 60.4
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 1.4e-57 227.3 191 59.7
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 1.8e-57 226.9 202 57.9
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 2.4e-57 226.5 199 57.8
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 4.0e-57 225.7 192 58.9
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 2.0e-56 223.4 229 52.4
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 3.4e-56 222.6 194 58.2
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 4.5e-56 222.2 229 53.3
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 7.6e-56 221.5 192 56.8
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 1.3e-55 220.7 197 58.9
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 1.3e-55 220.7 208 53.4
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 2.2e-55 219.9 196 56.1
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 3.8e-55 219.2 212 54.7
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 4.9e-55 218.8 191 58.6
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 4.9e-55 218.8 242 48.3
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 1.1e-54 217.6 224 51.8
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 1.4e-54 217.2 272 48.9
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.2e-53 214.2 209 53.1
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 1.8e-52 210.3 157 63.1
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 9.6e-51 204.5 194 53.1
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.3e-50 204.1 229 48.0
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 1.3e-50 204.1 205 52.2
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.8e-50 203.0 199 53.3
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 2.4e-49 199.9 194 52.1
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 2.9e-47 193.0 208 52.9
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 8.4e-47 191.4 198 53.0
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 1.2e-45 187.6 196 52.0
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 1.3e-44 184.1 145 62.1
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 5.1e-44 182.2 228 43.4
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 1.4e-41 174.1 207 44.4
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 2.4e-41 173.3 185 46.5
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 5.3e-41 172.2 146 57.5
BcaC08g45742 Brassica carinata HOM05D006270 ORTHO05D007755 9.3e-38 161.4 108 75.9
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 2.1e-37 160.2 187 44.9
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 9.7e-35 151.4 127 61.4
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 2.0e-32 143.7 127 61.4
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 3.4e-32 142.9 127 61.4
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 5.0e-31 139.0 144 53.5
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 8.5e-31 138.3 155 50.3
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 3.2e-30 136.3 117 56.4
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 5.5e-30 135.6 132 50.8
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 2.7e-29 133.3 166 44.0
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 2.7e-29 133.3 206 44.2
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 7.4e-27 125.2 118 51.7
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 5.3e-25 119.0 133 47.4
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 4.6e-21 105.9 147 43.5
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 6.1e-21 105.5 224 31.2
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 1.8e-20 104.0 216 34.7
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 6.7e-20 102.1 109 46.8
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 8.2e-18 95.1 126 46.8
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 2.4e-17 93.6 69 68.1
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-16 90.5 115 41.7
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 1.3e-15 87.8 65 66.2
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.2e-14 83.2 99 43.4
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 3.1e-09 66.6 46 65.2
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 2.5e-06 57.0 144 28.5
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 5.5e-06 55.8 89 38.2


User provided reference genes

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