Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.2e-131 473.4 275 100.0
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 2.9e-106 389.0 275 84.0
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.9e-101 372.5 277 79.8
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.1e-100 370.5 273 78.0
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 3.6e-96 355.5 276 82.2
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 3.1e-95 352.4 276 78.6
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 8.9e-95 350.9 276 78.3
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 3.4e-94 349.0 275 77.8
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 7.5e-94 347.8 276 81.5
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 3.2e-92 342.4 278 70.9
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 6.6e-90 334.7 278 75.5
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 5.4e-84 315.1 278 72.7
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.3e-82 310.5 280 71.8
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.3e-82 309.7 280 71.4
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 1.5e-81 307.0 280 71.4
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 9.9e-78 294.3 277 72.9
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 4.7e-72 275.4 219 76.3
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 2.4e-71 273.1 290 67.6
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 6.6e-58 228.4 284 60.6
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 1.1e-49 201.1 262 50.4
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.1e-49 201.1 268 51.9
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 3.7e-48 196.1 262 50.0
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 3.7e-48 196.1 262 50.0
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 3.7e-48 196.1 272 48.9
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 2.4e-47 193.4 275 49.1
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 3.1e-47 193.0 286 48.6
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.2e-43 181.0 275 45.5
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.6e-43 180.6 263 47.1
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.6e-43 180.6 263 47.1
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.7e-43 179.9 263 46.8
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 6.0e-43 178.7 275 47.6
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-42 177.6 275 47.3
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-42 177.6 275 47.3
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 3.9e-42 176.0 274 46.4
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 6.7e-42 175.3 274 45.3
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 8.7e-42 174.9 277 45.1
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 2.8e-40 169.9 246 46.7
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 3.4e-38 162.9 269 43.9
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 3.9e-34 149.4 271 40.2
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.9e-33 147.1 268 44.4
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 7.4e-33 145.2 275 38.9
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-32 144.4 138 70.3
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 6.9e-31 138.7 282 39.0
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.2e-30 137.9 271 39.9
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 1.5e-30 137.5 275 39.3
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 3.4e-30 136.3 215 45.6
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.5e-30 136.0 271 46.1
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 4.5e-30 136.0 271 39.5
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.9e-29 133.3 276 37.7
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 4.2e-28 129.4 266 38.3
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 9.4e-28 128.3 276 35.5
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.2e-27 127.9 286 35.7
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 2.3e-26 123.6 284 38.4
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 3.9e-26 122.9 276 41.3
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.1e-25 121.3 271 37.3
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 1.1e-25 121.3 271 34.7
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 1.5e-25 120.9 267 43.1
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 1.5e-25 120.9 275 34.9
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 1.5e-25 120.9 278 37.4
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 3.3e-25 119.8 274 38.0
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 9.7e-25 118.2 277 39.4
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.7e-25 118.2 274 35.0
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 1.3e-24 117.9 300 38.3
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 1.3e-24 117.9 266 36.1
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.3e-24 117.9 267 35.6
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 1.7e-24 117.5 275 38.9
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.7e-24 117.5 277 35.4
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 2.2e-24 117.1 270 35.9
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 2.2e-24 117.1 270 35.9
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 2.2e-24 117.1 278 34.9
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 3.7e-24 116.3 272 33.8
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 3.7e-24 116.3 273 35.5
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 3.7e-24 116.3 276 34.8
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 4.8e-24 115.9 269 34.9
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 6.3e-24 115.5 272 33.5
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 8.2e-24 115.2 280 33.9
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.1e-23 114.8 279 34.8
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 3.1e-23 113.2 286 32.9
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 4.1e-23 112.8 268 39.2
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 6.9e-23 112.1 302 33.1
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 6.9e-23 112.1 280 34.3
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 6.9e-23 112.1 276 36.6
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 9.1e-23 111.7 287 33.4
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 1.2e-22 111.3 304 34.9
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 1.2e-22 111.3 280 33.9
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.2e-22 111.3 275 37.8
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 2.0e-22 110.5 278 41.0
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.0e-22 110.5 273 33.3
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 3.4e-22 109.8 269 33.1
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 3.4e-22 109.8 266 35.0
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 5.9e-22 109.0 279 33.0
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 1.0e-21 108.2 307 42.0
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 1.3e-21 107.8 268 34.7
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 1.7e-21 107.5 302 32.8
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 2.2e-21 107.1 300 32.3
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 5.0e-21 105.9 276 33.0
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 8.5e-21 105.1 290 34.5
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 1.1e-20 104.8 288 32.6
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 1.4e-20 104.4 303 32.3
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 2.5e-20 103.6 275 32.7
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 4.2e-20 102.8 277 32.1
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 4.2e-20 102.8 267 34.1
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 7.2e-20 102.1 266 32.0
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 1.2e-19 101.3 276 33.3
BcaC08g47296 Brassica carinata HOM05D003173 ORTHO05D003546 2.7e-19 100.1 76 77.6
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 2.7e-19 100.1 271 32.5
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 2.7e-19 100.1 274 33.9
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 4.7e-19 99.4 286 31.8
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 4.7e-19 99.4 274 34.7
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.0e-18 98.2 274 31.0
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 1.8e-18 97.4 269 32.7
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 5.1e-18 95.9 278 31.3
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 1.1e-17 94.7 295 32.9
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.1e-17 94.7 271 32.8
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.5e-17 94.4 315 29.5
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 2.6e-17 93.6 270 31.1
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 3.3e-17 93.2 281 33.5
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 7.4e-17 92.0 279 34.1
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 9.7e-17 91.7 274 32.5
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 9.7e-17 91.7 291 29.9
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.7e-16 90.9 279 34.1
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 4.8e-16 89.4 274 33.2
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 4.8e-16 89.4 269 30.5
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 6.3e-16 89.0 276 35.9
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 1.1e-15 88.2 270 31.5
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 1.1e-15 88.2 279 35.5
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.8e-15 87.4 284 30.6
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 1.8e-15 87.4 270 30.4
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 2.4e-15 87.0 271 31.0
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 3.1e-15 86.7 206 35.9
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 3.1e-15 86.7 279 30.5
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 3.1e-15 86.7 274 36.5
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 4.1e-15 86.3 289 32.9
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 5.3e-15 85.9 278 31.3
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 7.0e-15 85.5 284 31.0
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 9.1e-15 85.1 269 30.5
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.6e-14 84.3 284 31.0
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 4.5e-14 82.8 281 30.6
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 5.9e-14 82.4 275 28.7
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 5.9e-14 82.4 223 28.7
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 5.9e-14 82.4 270 31.1
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 7.7e-14 82.0 276 34.4
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 1.3e-13 81.3 273 29.7
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.7e-13 80.9 274 31.4
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 3.8e-13 79.7 278 28.8
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 5.0e-13 79.3 275 29.8
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 1.5e-12 77.8 303 28.4
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 1.9e-12 77.4 264 28.8
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 1.9e-12 77.4 166 40.4
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 2.5e-12 77.0 200 32.5
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 5.5e-12 75.9 266 30.5
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 7.2e-12 75.5 239 31.8
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 1.2e-11 74.7 279 35.5
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 1.2e-11 74.7 273 27.5
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 6.1e-11 72.4 301 27.6
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 6.1e-11 72.4 252 29.8
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 8.0e-11 72.0 287 24.4
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 1.0e-10 71.6 248 29.8
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 1.4e-10 71.2 234 28.2
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 2.3e-10 70.5 271 29.2
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 2.3e-10 70.5 273 28.9
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 4.0e-10 69.7 248 29.8
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 5.2e-10 69.3 210 30.5
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 8.8e-10 68.6 106 54.7
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 1.5e-09 67.8 248 29.4
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 2.6e-09 67.0 209 32.1
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 3.3e-09 66.6 190 34.2
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 3.3e-09 66.6 161 35.4
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 7.5e-09 65.5 222 29.3
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 9.7e-09 65.1 210 30.0
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 1.3e-08 64.7 194 33.5
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.8e-08 63.5 197 31.0
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 4.8e-08 62.8 189 34.4
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 4.8e-08 62.8 278 29.5
Prupe.7G175300 Prunus persica HOM05D003173 ORTHO05D003546 4.8e-08 62.8 221 27.6
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 8.2e-08 62.0 106 47.2
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 8.2e-08 62.0 190 35.3
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 8.2e-08 62.0 213 29.6
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.8e-07 60.8 191 30.4
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 1.8e-07 60.8 278 29.1
Lj4g0000766 Lotus japonicus HOM05D003173 ORTHO05D003546 2.4e-07 60.5 187 31.6
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 3.1e-07 60.1 226 27.4
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 9.1e-07 58.5 255 25.9
Gohir.D12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.5e-06 56.2 191 28.8
Potri.005G107500 Populus trichocarpa HOM05D003173 ORTHO05D003546 5.9e-06 55.8 263 27.8
CiPaw.07G063500 Carya illinoinensis HOM05D003173 ORTHO05D003546 7.7e-06 55.5 144 27.8


User provided reference genes

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