Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.8e-162 575.9 285 100.0
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.2e-126 456.8 292 80.1
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.5e-124 449.9 295 78.6
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.5e-124 449.9 298 77.9
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.5e-124 449.1 293 79.2
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.1e-123 446.0 298 77.5
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 8.0e-123 444.1 298 77.2
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 5.2e-122 441.4 295 77.3
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 5.2e-122 441.4 295 77.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 2.7e-118 429.1 291 79.0
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.9e-116 422.9 278 78.1
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.7e-112 409.8 295 74.2
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.2e-107 393.7 262 74.4
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.7e-104 382.1 270 71.9
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.2e-99 364.8 280 70.7
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.1e-98 362.5 280 70.4
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 6.8e-98 361.3 279 66.7
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 9.2e-95 350.9 227 78.9
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 3.9e-93 345.5 290 61.7
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 7.3e-92 341.3 316 55.7
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.8e-90 336.7 294 58.5
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 6.8e-90 334.7 293 59.7
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.5e-89 333.6 279 65.9
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 2.0e-89 333.2 292 59.9
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 3.4e-89 332.4 292 60.3
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 4.4e-89 332.0 292 59.9
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.8e-89 331.6 292 59.6
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 9.9e-89 330.9 284 61.3
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.3e-88 330.5 303 57.4
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.9e-88 329.3 286 59.1
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 6.4e-88 328.2 288 58.3
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 6.4e-88 328.2 286 58.4
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 8.3e-88 327.8 284 59.9
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 4.1e-87 325.5 287 57.1
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.2e-86 323.9 302 55.3
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.1e-86 323.2 283 57.6
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 3.5e-86 322.4 287 59.9
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 6.0e-86 321.6 294 56.5
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 7.8e-86 321.2 290 56.2
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 7.8e-86 321.2 319 53.3
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.0e-85 320.9 273 60.1
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.0e-85 320.9 286 58.0
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 2.3e-85 319.7 290 57.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 2.3e-85 319.7 290 56.2
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 8.6e-85 317.8 281 59.1
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.5e-84 317.0 284 58.1
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 4.3e-84 315.5 285 55.8
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.3e-84 315.5 286 56.3
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.3e-84 314.7 281 58.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 9.5e-84 314.3 285 56.5
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.5e-84 314.3 283 58.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.6e-83 313.5 285 56.5
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.1e-83 313.2 283 58.0
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 2.1e-83 313.2 301 55.5
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 2.8e-83 312.8 286 54.2
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 3.6e-83 312.4 275 57.5
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.6e-83 312.4 285 58.2
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 4.7e-83 312.0 285 54.4
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 4.7e-83 312.0 285 54.4
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.7e-83 312.0 282 57.1
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 2.4e-82 309.7 286 54.2
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.1e-82 309.3 270 58.1
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 4.0e-82 308.9 287 55.7
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 6.8e-82 308.1 287 54.7
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.9e-82 307.8 287 56.4
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 2.0e-81 306.6 291 54.6
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 4.4e-81 305.4 289 54.3
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 4.4e-81 305.4 289 54.3
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.4e-81 305.4 294 54.8
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.3e-80 303.9 281 59.1
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.1e-79 300.8 278 61.5
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 2.1e-78 296.6 289 52.2
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.7e-78 296.2 303 53.1
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.5e-78 295.8 289 52.6
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 4.6e-78 295.4 290 54.1
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.0e-77 294.3 291 53.3
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.0e-77 294.3 276 55.8
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.3e-77 293.9 273 60.4
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.9e-77 292.4 285 54.4
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 5.1e-77 292.0 305 50.5
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.5e-76 290.4 276 53.6
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.5e-76 290.4 265 56.2
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.5e-76 290.4 285 54.4
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.6e-76 288.5 290 54.1
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 8.1e-75 284.6 283 52.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.8e-74 283.5 289 50.9
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.8e-74 283.5 281 50.9
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.0e-74 282.3 199 72.4
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.6e-73 279.6 347 49.0
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 7.6e-73 278.1 288 52.4
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.3e-72 277.3 247 57.5
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.3e-72 277.3 315 49.2
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.9e-72 275.4 278 54.0
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.4e-71 273.1 225 62.7
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 2.1e-70 270.0 283 50.9
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 4.6e-70 268.9 307 48.5
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 6.0e-70 268.5 276 52.9
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.5e-68 263.1 281 50.2
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 4.8e-67 258.8 187 72.7
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 6.2e-67 258.5 281 48.4
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 5.3e-66 255.4 232 56.9
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 2.0e-65 253.4 263 49.4
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.3e-64 250.8 280 49.3
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.9e-64 249.6 280 50.7
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 8.4e-64 248.1 262 51.5
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 5.4e-63 245.4 278 48.9
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.0e-61 241.1 213 58.7
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.3e-59 234.2 307 45.9
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.3e-58 228.8 235 53.2
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 3.4e-57 226.1 211 54.5
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.4e-56 221.9 319 40.8
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 5.5e-55 218.8 213 53.5
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 9.3e-55 218.0 268 44.8
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.2e-54 217.6 287 46.0
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.0e-53 214.5 213 49.8
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 3.7e-51 206.1 249 51.8
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 2.2e-48 196.8 224 50.0
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.4e-47 194.1 203 49.3
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 1.2e-46 191.0 306 38.2
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.8e-45 187.2 158 60.8
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 2.5e-44 183.3 302 37.1
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 5.3e-42 175.6 269 37.9
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 6.9e-42 175.3 161 56.5
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 3.4e-41 172.9 166 50.0
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.0e-40 171.4 206 51.0
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.3e-40 171.0 296 36.5
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.3e-40 171.0 268 38.8
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 9.7e-36 154.8 119 64.7
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 9.7e-36 154.8 129 59.7
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 1.2e-33 147.9 132 56.8
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 2.0e-33 147.1 175 50.3
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 2.7e-30 136.7 94 71.3
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 3.0e-29 133.3 148 50.7
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 5.3e-26 122.5 111 56.8
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-25 120.2 111 56.8
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 7.2e-23 112.1 245 33.5
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 9.4e-23 111.7 118 47.5
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 3.3e-20 103.2 109 47.7
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 2.2e-16 90.5 82 57.3
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 3.2e-15 86.7 59 78.0
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 3.2e-15 86.7 59 78.0
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.2e-15 86.7 114 42.1
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.3e-13 80.5 58 69.0
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 2.3e-13 80.5 345 24.9
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 3.0e-13 80.1 143 38.5
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 7.5e-12 75.5 58 58.6
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 3.7e-11 73.2 200 28.0
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 3.5e-09 66.6 240 26.2
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 3.5e-09 66.6 229 26.2
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 4.5e-09 66.2 192 27.6
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 7.7e-09 65.5 194 28.9
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.7e-08 64.3 167 28.1
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 3.8e-08 63.2 209 29.7
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 3.8e-08 63.2 171 26.3
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 3.8e-08 63.2 190 26.8
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 5.0e-08 62.8 171 27.5
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 5.0e-08 62.8 163 27.6
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 1.9e-07 60.8 237 25.7
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.9e-07 60.8 181 28.7
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 2.5e-07 60.5 153 30.7
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.5e-07 60.5 242 26.0
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 3.2e-07 60.1 226 25.2
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 3.2e-07 60.1 248 27.4
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 4.2e-07 59.7 250 26.0
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 4.2e-07 59.7 221 24.9
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 5.5e-07 59.3 45 62.2
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 7.2e-07 58.9 168 27.4
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 9.4e-07 58.5 226 25.2
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.2e-06 58.2 159 27.0
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 1.2e-06 58.2 216 25.5
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.2e-06 58.2 190 24.7
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 1.6e-06 57.8 176 26.7
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 2.1e-06 57.4 248 26.2
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.1e-06 57.4 223 26.9
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 2.7e-06 57.0 155 27.1
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 2.7e-06 57.0 170 28.2
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 3.6e-06 56.6 163 28.8
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 3.6e-06 56.6 163 28.2
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 3.6e-06 56.6 223 26.0
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 3.6e-06 56.6 233 23.6
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 3.6e-06 56.6 212 25.9
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 6.1e-06 55.8 221 26.2
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.1e-06 55.8 167 29.3
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 8.0e-06 55.5 190 26.8


User provided reference genes

Program Settings