Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 1.9e-148 529.3 287 100.0
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 4.1e-135 485.0 287 87.8
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 1.0e-133 480.3 287 86.1
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 5.0e-133 478.0 287 85.0
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.0e-130 470.3 288 84.7
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 4.0e-130 468.4 287 85.4
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 4.0e-130 468.4 287 85.4
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 2.6e-129 465.7 287 85.7
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 8.3e-128 460.7 309 77.0
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 8.3e-128 460.7 309 77.0
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.6e-115 419.9 290 75.2
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 8.1e-107 391.0 281 76.2
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 6.2e-99 364.8 235 80.9
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 3.3e-92 342.4 196 90.8
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.6e-91 340.1 276 64.5
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 9.0e-90 334.3 278 61.2
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 2.0e-89 333.2 279 59.5
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 3.4e-89 332.4 276 61.2
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 4.5e-89 332.0 275 60.4
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 5.4e-87 325.1 280 58.2
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 7.1e-87 324.7 269 61.7
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 9.3e-87 324.3 271 61.6
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 9.3e-87 324.3 266 63.2
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 6.0e-86 321.6 271 60.9
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 6.0e-86 321.6 276 60.9
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 6.0e-86 321.6 280 63.6
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 7.9e-86 321.2 283 59.4
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 1.0e-85 320.9 273 62.3
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 5.1e-85 318.5 280 57.1
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 6.7e-85 318.2 267 62.5
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 8.7e-85 317.8 262 62.6
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 1.1e-84 317.4 272 59.6
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.1e-84 317.4 272 59.6
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.1e-84 317.4 270 60.4
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 2.5e-84 316.2 270 61.1
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 3.3e-84 315.8 273 59.3
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 2.1e-83 313.2 269 59.9
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 2.1e-83 313.2 280 57.5
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 2.8e-83 312.8 279 58.8
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 4.8e-83 312.0 272 59.2
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.8e-83 312.0 263 60.5
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 8.1e-83 311.2 270 59.3
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 1.4e-82 310.5 278 57.2
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 2.4e-82 309.7 275 60.0
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 2.4e-82 309.7 282 57.1
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 3.1e-82 309.3 268 60.4
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 5.3e-82 308.5 274 58.4
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 5.3e-82 308.5 274 58.4
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 5.3e-82 308.5 279 57.3
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 5.3e-82 308.5 279 57.3
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 1.5e-81 307.0 269 58.0
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 2.0e-81 306.6 270 57.8
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 7.6e-81 304.7 276 58.0
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 7.6e-81 304.7 268 57.1
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 7.6e-81 304.7 279 58.4
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 7.6e-81 304.7 288 56.9
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 9.9e-81 304.3 268 57.5
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 2.2e-80 303.1 270 56.7
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 2.2e-80 303.1 263 59.7
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 2.9e-80 302.8 270 60.0
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 3.8e-80 302.4 280 57.1
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 4.9e-80 302.0 257 58.8
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 6.4e-80 301.6 270 57.4
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 3.2e-79 299.3 281 54.8
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.5e-79 298.5 264 56.8
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.2e-78 297.4 241 63.1
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 2.1e-78 296.6 272 56.6
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 2.7e-78 296.2 322 50.0
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.8e-77 293.5 269 57.2
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 6.7e-77 291.6 268 56.7
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 8.7e-77 291.2 248 60.5
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.1e-76 290.8 253 58.1
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 1.9e-76 290.0 266 57.1
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 5.6e-76 288.5 272 56.6
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.6e-75 287.0 268 56.0
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 1.8e-74 283.5 324 50.3
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 4.0e-74 282.3 273 54.6
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 9.0e-74 281.2 254 57.1
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.5e-73 280.4 274 55.8
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.5e-73 280.4 273 55.3
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 1.0e-72 277.7 274 55.1
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.3e-72 277.3 263 55.1
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 1.3e-72 277.3 330 47.6
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 3.8e-72 275.8 269 55.0
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 7.4e-68 261.5 245 55.1
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.3e-67 260.8 279 51.3
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 9.0e-66 254.6 272 51.8
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.2e-65 254.2 265 53.2
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 3.4e-65 252.7 265 52.8
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.1e-63 247.7 197 63.5
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 7.9e-62 241.5 284 46.5
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 7.9e-62 241.5 193 64.2
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 6.5e-56 221.9 170 65.9
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.6e-54 217.2 283 44.5
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 3.0e-53 213.0 209 53.1
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 1.1e-50 204.5 320 41.6
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.1e-44 184.5 202 48.5
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.1e-44 184.5 156 57.7
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.1e-44 184.5 212 50.0
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 2.8e-43 179.9 261 42.9
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 5.3e-42 175.6 170 54.1
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.3e-35 154.5 136 55.9
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 1.5e-31 141.0 151 52.3
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 5.2e-29 132.5 147 55.1
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 6.3e-19 99.0 189 34.9
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 5.4e-18 95.9 281 33.1
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 4.4e-12 76.3 102 45.1
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 9.8e-12 75.1 275 27.3
C02p30170 Brassica napus HOM05D006979 ORTHO05D033722 3.2e-10 70.1 52 73.1
BolC2t09067H Brassica oleracea HOM05D006979 ORTHO05D033722 3.2e-10 70.1 52 73.1
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 7.8e-09 65.5 52 63.5
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 3.0e-08 63.5 237 28.3
PSO339G6694 Papaver somniferum HOM05D006655 ORTHO05D007986 5.0e-08 62.8 252 26.2
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 5.0e-08 62.8 121 33.1
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 8.6e-08 62.0 52 59.6
PSO384G1723 Papaver somniferum HOM05D006655 ORTHO05D007986 1.1e-07 61.6 252 25.8
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 1.1e-07 61.6 252 27.0
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 1.5e-07 61.2 256 26.6
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 1.9e-07 60.8 231 27.7
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 2.5e-07 60.5 252 26.2
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 3.3e-07 60.1 252 26.6
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 5.6e-07 59.3 252 27.0
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 5.6e-07 59.3 252 27.0
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 7.3e-07 58.9 240 26.2
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 7.3e-07 58.9 238 26.5
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 9.5e-07 58.5 229 25.8
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 1.2e-06 58.2 232 26.7
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 1.2e-06 58.2 231 26.8
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 1.2e-06 58.2 231 26.8
FAN16G3233 Fragaria x ananassa HOM05D006655 ORTHO05D007986 2.1e-06 57.4 252 26.6
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 2.1e-06 57.4 243 25.5
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 2.1e-06 57.4 243 25.5
BraA02t06859Z Brassica rapa HOM05D042594 ORTHO05D033722 2.8e-06 57.0 52 63.5
Sabra16G0154600 Salix brachista HOM05D006655 ORTHO05D007986 2.8e-06 57.0 231 25.5
Atru.chr3.2616 Acer truncatum HOM05D006655 ORTHO05D007986 3.6e-06 56.6 226 27.0
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 3.6e-06 56.6 231 26.0
Aqoxy1G00312 Aquilegia oxysepala HOM05D006655 ORTHO05D007986 4.7e-06 56.2 234 26.1
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 6.2e-06 55.8 231 26.0
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 6.2e-06 55.8 238 26.5
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 8.0e-06 55.5 238 26.1
Haze_23196 Corylus avellana HOM05D006655 ORTHO05D007986 8.0e-06 55.5 253 26.5
DCAR_029978 Daucus carota HOM05D006655 ORTHO05D007986 8.0e-06 55.5 229 24.9
HPP92_025004 Vanilla planifolia HOM05D006655 ORTHO05D007986 8.0e-06 55.5 238 26.5


User provided reference genes

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