Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.2e-138 496.9 322 100.0
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 3.2e-120 435.6 323 87.0
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 6.7e-118 427.9 325 87.4
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 6.7e-118 427.9 325 87.4
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 3.3e-117 425.6 325 87.1
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.8e-116 422.5 327 85.0
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.8e-116 422.5 327 86.5
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 3.1e-115 419.1 325 88.0
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 9.0e-115 417.5 326 87.4
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.2e-114 417.2 326 87.4
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-113 412.9 328 83.2
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.4e-112 410.2 325 81.8
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.1e-107 392.5 326 84.4
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 2.6e-106 389.4 330 83.6
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 3.4e-106 389.0 326 77.9
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 3.2e-104 382.5 331 79.2
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 7.9e-103 377.9 331 80.1
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 3.0e-65 253.1 254 78.0
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 5.0e-65 252.3 256 77.3
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.1e-64 251.1 326 62.3
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.1e-64 251.1 326 62.3
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.1e-64 251.1 326 62.3
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 1.2e-58 231.1 320 64.1
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.0e-58 230.3 295 64.7
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-52 209.5 329 52.3
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 1.3e-44 184.5 247 59.1
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 5.6e-32 142.5 346 46.8
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 5.6e-32 142.5 347 45.8
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 7.3e-32 142.1 345 47.0
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.8e-31 140.2 350 46.0
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.8e-31 139.4 340 36.2
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 6.2e-31 139.0 316 46.2
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.4e-30 137.9 342 44.7
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 4.0e-30 136.3 338 39.9
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 4.0e-30 136.3 346 40.8
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 9.0e-30 135.2 347 47.8
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.0e-29 134.0 345 47.0
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 2.6e-29 133.7 345 46.7
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 3.4e-29 133.3 334 40.7
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 7.6e-29 132.1 350 40.3
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.7e-28 131.0 353 39.7
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.8e-28 129.8 345 38.8
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 8.4e-28 128.6 341 47.2
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.4e-27 127.9 343 47.8
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.4e-27 127.1 342 40.1
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 4.2e-27 126.3 348 42.0
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.4e-27 125.9 345 39.4
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.6e-26 124.4 328 45.1
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 4.6e-26 122.9 353 44.8
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 7.9e-26 122.1 342 33.3
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.0e-25 121.7 346 31.8
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.0e-25 121.7 335 38.2
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.0e-25 121.7 352 45.2
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-25 121.3 341 46.6
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-25 121.3 337 46.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 2.3e-25 120.6 337 39.8
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 3.0e-25 120.2 337 46.0
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.0e-25 120.2 337 46.0
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.0e-25 120.2 340 47.1
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.9e-25 119.8 347 37.5
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.7e-25 119.0 341 37.8
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.7e-25 118.6 341 37.8
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.7e-25 118.6 341 37.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 1.1e-24 118.2 327 43.7
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 2.5e-24 117.1 329 35.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.6e-24 115.9 270 33.7
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.3e-23 114.8 309 35.3
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.3e-23 114.8 332 38.9
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.3e-23 114.8 303 43.9
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.1e-23 114.0 302 46.0
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 2.1e-23 114.0 371 31.5
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.8e-23 113.6 372 30.6
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 3.6e-23 113.2 316 33.5
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 4.8e-23 112.8 322 42.2
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 4.8e-23 112.8 322 42.2
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.2e-23 112.5 339 33.3
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.1e-22 111.7 326 41.4
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.8e-22 110.9 347 33.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.1e-22 110.2 327 33.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 4.0e-22 109.8 357 43.4
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.2e-21 108.2 318 38.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.2e-21 108.2 320 44.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.5e-21 107.8 339 29.8
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 2.6e-21 107.1 343 46.9
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 3.4e-21 106.7 339 37.5
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.7e-20 104.4 335 39.7
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 8.4e-20 102.1 273 32.6
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 2.4e-19 100.5 341 36.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 3.2e-19 100.1 331 34.4
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 4.2e-19 99.8 340 36.5
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.2e-19 99.8 336 36.6
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.1e-19 99.0 293 38.9
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.3e-19 98.6 342 31.0
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 9.3e-19 98.6 328 36.6
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 9.3e-19 98.6 321 33.3
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.6e-18 97.8 311 36.7
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.0e-18 95.9 295 38.6
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 3.9e-17 93.2 321 35.5
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 5.1e-17 92.8 311 41.2
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 4.3e-16 89.7 341 39.3
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 7.4e-16 89.0 236 33.5
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 9.6e-16 88.6 321 37.4
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.3e-15 88.2 319 40.4
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.3e-15 88.2 311 41.8
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-15 88.2 341 30.2
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.6e-15 87.8 327 31.2
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 2.1e-15 87.4 371 29.9
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.8e-15 87.0 331 35.3
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.7e-15 86.7 321 38.0
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 3.7e-15 86.7 311 35.7
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 4.8e-15 86.3 317 39.7
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 4.8e-15 86.3 341 39.3
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.8e-15 86.3 338 34.6
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 6.2e-15 85.9 241 36.5
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.1e-15 85.5 308 35.1
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.4e-14 84.7 325 31.1
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 5.3e-14 82.8 317 38.2
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 9.0e-14 82.0 332 31.0
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.0e-14 82.0 320 28.4
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 2.0e-13 80.9 373 34.6
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 2.0e-13 80.9 236 47.0
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 3.4e-13 80.1 141 45.4
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 5.8e-13 79.3 328 30.5
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.0e-12 78.6 308 36.4
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 3.8e-12 76.6 341 28.4
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 4.9e-12 76.3 308 28.9
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 4.9e-12 76.3 308 28.9
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.1e-11 75.1 120 44.2
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 7.1e-11 72.4 314 37.3
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 1.6e-10 71.2 354 32.8
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 7.9e-10 68.9 329 29.8
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.0e-09 68.6 331 38.4
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.3e-09 67.4 114 46.5
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.3e-09 67.4 136 35.3
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.3e-09 67.4 324 27.8
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 2.3e-09 67.4 141 34.8
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.1e-08 65.1 321 28.3
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 1.1e-08 65.1 324 37.0
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.5e-08 64.7 330 29.7
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 5.7e-08 62.8 323 34.4
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 1.3e-07 61.6 316 27.8
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 3.7e-07 60.1 383 38.6
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 6.3e-07 59.3 322 26.4
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.1e-06 58.5 120 37.5
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.8e-06 57.8 338 27.8


User provided reference genes

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