Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 8.6e-188 660.2 347 100.0
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 1.2e-168 596.7 388 84.0
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 2.5e-158 562.4 389 79.2
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.6e-157 559.7 390 79.0
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 7.9e-157 557.4 387 80.4
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 3.0e-156 555.4 401 76.8
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 5.1e-156 554.7 408 75.7
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 3.7e-154 548.5 418 74.2
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 1.8e-153 546.2 391 78.5
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 6.9e-153 544.3 391 78.0
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 2.0e-152 542.7 423 72.8
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 4.6e-149 531.6 400 75.5
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 5.0e-143 511.5 386 73.3
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 1.5e-123 446.8 389 63.8
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 4.0e-108 395.6 399 57.1
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 1.7e-106 390.2 387 56.6
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 2.8e-106 389.4 397 57.4
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 1.4e-105 387.1 391 57.8
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 5.9e-104 381.7 389 56.0
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 8.6e-103 377.9 408 54.4
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 1.2e-101 374.0 392 54.3
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 4.0e-100 369.0 379 55.4
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 6.8e-100 368.2 379 56.2
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 4.4e-99 365.5 397 54.9
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 2.8e-98 362.8 386 55.7
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 3.7e-98 362.5 395 52.7
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 2.4e-97 359.8 394 52.8
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 4.1e-97 359.0 380 54.2
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 9.2e-97 357.8 386 55.4
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 1.6e-96 357.1 376 54.3
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 4.5e-96 355.5 389 54.2
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 1.3e-95 354.0 389 53.5
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.7e-95 353.6 409 51.1
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 2.9e-95 352.8 408 50.7
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 2.9e-95 352.8 378 55.0
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 5.0e-95 352.1 381 54.1
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 6.6e-95 351.7 408 50.7
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 8.6e-95 351.3 408 52.2
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 1.6e-93 347.1 384 54.7
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 2.3e-92 343.2 390 52.6
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.4e-91 339.3 426 49.1
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 6.4e-90 335.1 396 51.8
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.4e-89 334.0 398 49.0
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 1.9e-89 333.6 371 53.1
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 3.2e-89 332.8 374 50.0
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 7.0e-89 331.6 381 52.8
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 1.2e-88 330.9 321 56.7
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 1.6e-88 330.5 384 48.2
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 4.6e-88 328.9 408 49.3
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 4.6e-88 328.9 369 52.3
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 1.7e-87 327.0 397 49.6
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 4.3e-86 322.4 357 53.8
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 5.6e-86 322.0 349 52.7
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 2.1e-85 320.1 379 49.3
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 1.4e-84 317.4 334 55.4
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 2.3e-84 316.6 309 57.6
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 3.1e-84 316.2 380 50.5
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 2.9e-82 309.7 386 48.2
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 6.4e-82 308.5 386 47.9
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 3.2e-81 306.2 355 51.0
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 3.2e-81 306.2 329 53.8
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 5.4e-81 305.4 348 51.4
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 7.1e-81 305.1 353 50.1
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 2.1e-80 303.5 314 54.5
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 1.2e-77 294.3 338 50.9
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 4.0e-76 289.3 382 44.5
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 7.6e-75 285.0 384 45.3
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 4.1e-73 279.3 384 45.3
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 3.5e-72 276.2 378 45.0
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 1.5e-70 270.8 363 47.4
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 2.0e-67 260.4 385 44.7
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 2.6e-67 260.0 306 48.4
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 4.9e-66 255.8 186 69.4
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 7.1e-65 251.9 341 47.5
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 6.0e-64 248.8 364 42.3
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 3.9e-63 246.1 273 51.6
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 3.3e-62 243.0 186 68.8
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 1.7e-55 220.7 245 53.5
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 1.5e-54 217.6 270 47.8
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 4.3e-54 216.1 388 38.1
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 4.5e-51 206.1 242 49.2
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 2.9e-50 203.4 314 41.1
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 9.3e-49 198.4 214 52.3
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 9.3e-49 198.4 394 37.6
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 5.1e-47 192.6 389 37.0
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 1.2e-43 181.4 323 37.5
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 4.9e-42 176.0 354 35.0
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 8.4e-42 175.3 200 51.0
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 3.2e-41 173.3 271 42.1
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 9.6e-38 161.8 260 41.9
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 7.6e-35 152.1 352 32.1
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.1e-33 148.3 339 31.6
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 8.2e-29 132.1 109 62.4
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 2.2e-26 124.0 160 50.0
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 3.0e-23 113.6 81 70.4
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 1.5e-22 111.3 162 45.1
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 1.5e-19 101.3 140 47.9
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 2.2e-18 97.4 99 56.6
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 3.8e-18 96.7 116 49.1
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 7.4e-14 82.4 223 31.4
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 7.0e-12 75.9 145 34.5
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 1.0e-10 72.0 118 44.9
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 8.5e-10 68.9 180 28.9
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 2.5e-09 67.4 38 81.6
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 1.4e-07 61.6 124 37.9
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 2.3e-07 60.8 47 59.6


User provided reference genes

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