Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018779m.g Eutrema salsugineum HOM05D006546 ORTHO05D008362 4.1e-201 704.5 355 100.0
Sp5g31870 Schrenkiella parvula HOM05D006546 ORTHO05D008362 8.8e-188 660.2 355 93.8
AT1G76730 Arabidopsis thaliana HOM05D006546 ORTHO05D008362 6.6e-183 644.0 355 91.5
AL2G36880 Arabidopsis lyrata HOM05D006546 ORTHO05D008362 1.1e-182 643.3 355 92.4
Carub.0002s2364 Capsella rubella HOM05D006546 ORTHO05D008362 4.0e-180 634.8 355 91.5
C06p31830 Brassica napus HOM05D006546 ORTHO05D008362 2.8e-173 612.1 356 87.6
BolC6t38311H Brassica oleracea HOM05D006546 ORTHO05D008362 2.8e-173 612.1 356 87.6
BraA07t30475Z Brassica rapa HOM05D006546 ORTHO05D008362 1.8e-172 609.4 356 87.1
BcaC08g45513 Brassica carinata HOM05D006546 ORTHO05D008362 2.3e-172 609.0 356 87.4
Aa31LG4G6800 Aethionema arabicum HOM05D006546 ORTHO05D008362 2.6e-171 605.5 355 85.6
A07p28390 Brassica napus HOM05D006546 ORTHO05D008362 4.4e-171 604.7 356 86.5
BcaB02g07073 Brassica carinata HOM05D006546 ORTHO05D008362 1.4e-148 530.0 288 92.0
Cpa.g.sc49.98 Carica papaya HOM05D006546 ORTHO05D008362 7.6e-139 497.7 363 70.8
GSVIVG01034559001 Vitis vinifera HOM05D006546 ORTHO05D008362 7.1e-137 491.1 356 73.0
Atru.chr13.2063_Atru.chr13.2062 Acer truncatum HOM05D006546 ORTHO05D008362 1.2e-136 490.3 355 71.8
TWI34G0343 Tripterygium wilfordii HOM05D006546 ORTHO05D008362 1.2e-136 490.3 354 70.9
Potri.005G194800 Populus trichocarpa HOM05D006546 ORTHO05D008362 2.1e-136 489.6 308 79.2
Prupe.8G036900 Prunus persica HOM05D006546 ORTHO05D008362 3.5e-136 488.8 316 79.4
MD05G1030000 Malus domestica HOM05D006546 ORTHO05D008362 6.0e-136 488.0 323 78.6
CANSAT25G3312 Cannabis sativa HOM05D006546 ORTHO05D008362 1.7e-135 486.5 354 71.2
Manes.18G093500 Manihot esculenta HOM05D006546 ORTHO05D008362 2.3e-135 486.1 306 79.1
PSO541G2164 Papaver somniferum HOM05D006546 ORTHO05D008362 2.3e-135 486.1 326 75.2
Gorai.002G231100 Gossypium raimondii HOM05D006546 ORTHO05D008362 3.9e-135 485.3 357 70.0
Lj4A701T20 Lonicera japonica HOM05D006546 ORTHO05D008362 3.9e-135 485.3 336 74.1
Nn5g28792 Nelumbo nucifera HOM05D006546 ORTHO05D008362 8.7e-135 484.2 339 72.6
PGR042G3407 Punica granatum HOM05D006546 ORTHO05D008362 8.7e-135 484.2 355 70.1
CiPaw.16G009700 Carya illinoinensis HOM05D006546 ORTHO05D008362 1.5e-134 483.4 351 71.8
Glyma.16G164900 Glycine max HOM05D006546 ORTHO05D008362 3.6e-133 478.8 326 74.5
CSS0026250 Camellia sinensis var. sinensis HOM05D006546 ORTHO05D008362 6.2e-133 478.0 359 69.6
arahy.Tifrunner.gnm1.ann1.PKA9SD Arachis hypogaea HOM05D006546 ORTHO05D008362 1.4e-132 476.9 320 74.1
AUR62040584 Chenopodium quinoa HOM05D006546 ORTHO05D008362 1.4e-132 476.9 344 71.2
Phvul.004G092300 Phaseolus vulgaris HOM05D006546 ORTHO05D008362 1.8e-132 476.5 343 71.4
COL.COLO4_03565 Corchorus olitorius HOM05D006546 ORTHO05D008362 2.4e-132 476.1 363 68.6
TAR625G0865 Trochodendron aralioides HOM05D006546 ORTHO05D008362 2.4e-132 476.1 332 72.3
VMungo0464G1775 Vigna mungo HOM05D006546 ORTHO05D008362 3.1e-132 475.7 321 75.4
SGA_v2.0_scaffold195G40788 Striga asiatica HOM05D006546 ORTHO05D008362 5.3e-132 474.9 303 77.9
Migut.C00976 Erythranthe guttata HOM05D006546 ORTHO05D008362 1.2e-131 473.8 341 71.0
FvH4_2g13270 Fragaria vesca HOM05D006546 ORTHO05D008362 1.2e-131 473.8 325 74.5
FAN20G1322 Fragaria x ananassa HOM05D006546 ORTHO05D008362 2.0e-131 473.0 331 73.4
Lj2g0010381 Lotus japonicus HOM05D006546 ORTHO05D008362 2.6e-131 472.6 310 77.4
Cc10_g15070 Coffea canephora HOM05D006546 ORTHO05D008362 7.6e-131 471.1 335 72.2
Duzib093G0633 Durio zibethinus HOM05D006546 ORTHO05D008362 2.2e-130 469.5 321 73.2
Lsat_1_v5_gn_1_5280 Lactuca sativa HOM05D006546 ORTHO05D008362 2.2e-130 469.5 305 76.4
Nitab4.5_0006961g0030 Nicotiana tabacum HOM05D006546 ORTHO05D008362 2.2e-130 469.5 302 77.5
Cfa018304 Carpinus fangiana HOM05D006546 ORTHO05D008362 2.9e-130 469.2 331 72.8
Thecc.08G155700 Theobroma cacao HOM05D006546 ORTHO05D008362 2.9e-130 469.2 356 67.1
MSTRG.1097 Avicennia marina HOM05D006546 ORTHO05D008362 3.8e-130 468.8 358 68.2
Solyc04g071700.3 Solanum lycopersicum HOM05D006546 ORTHO05D008362 3.8e-130 468.8 313 74.8
Actinidia17779 Actinidia chinensis HOM05D006546 ORTHO05D008362 4.9e-130 468.4 356 69.1
SalBow7G0432 Salvia bowleyana HOM05D006546 ORTHO05D008362 4.9e-130 468.4 342 70.2
Sopen04g027680 Solanum pennellii HOM05D006546 ORTHO05D008362 4.9e-130 468.4 313 74.8
Aqoxy6G00397 Aquilegia oxysepala HOM05D006546 ORTHO05D008362 2.4e-129 466.1 319 72.7
PGSC0003DMG400006373 Solanum tuberosum HOM05D006546 ORTHO05D008362 2.4e-129 466.1 313 74.4
Psat1g100360 Pisum sativum HOM05D006546 ORTHO05D008362 5.4e-129 464.9 311 75.6
MELO3C008332.2 Cucumis melo HOM05D006546 ORTHO05D008362 7.1e-129 464.5 325 70.2
Ca_03250_v3 Cicer arietinum L. HOM05D006546 ORTHO05D008362 9.3e-129 464.2 321 73.2
Medtr6g037530 Medicago truncatula HOM05D006546 ORTHO05D008362 9.3e-129 464.2 304 77.0
HanXRQChr04g0115661 Helianthus annuus HOM05D006546 ORTHO05D008362 1.6e-128 463.4 317 74.1
vmacro01645 Vaccinium macrocarpon HOM05D006546 ORTHO05D008362 1.6e-128 463.4 311 74.6
ECA247G1092 Erigeron canadensis HOM05D006546 ORTHO05D008362 2.1e-128 463.0 304 75.3
Hund17460 Selenicereus undatus HOM05D006546 ORTHO05D008362 2.1e-128 463.0 348 69.3
Sabra05G0148300 Salix brachista HOM05D006546 ORTHO05D008362 2.7e-128 462.6 417 60.7
CsaV3_6G005120 Cucumis sativus L. HOM05D006546 ORTHO05D008362 3.5e-128 462.2 322 70.5
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.0e-127 460.7 325 73.2
QL02p037672 Quercus lobata HOM05D006546 ORTHO05D008362 1.3e-127 460.3 303 76.9
Haze_17787 Corylus avellana HOM05D006546 ORTHO05D008362 3.9e-127 458.8 358 68.4
FAN15G0764 Fragaria x ananassa HOM05D006546 ORTHO05D008362 5.1e-127 458.4 312 75.6
QL02p038646 Quercus lobata HOM05D006546 ORTHO05D008362 9.6e-126 454.1 332 71.7
Nitab4.5_0001649g0020 Nicotiana tabacum HOM05D006546 ORTHO05D008362 1.3e-125 453.8 313 73.5
Rhsim11G0111500 Rhododendron simsii HOM05D006546 ORTHO05D008362 4.8e-125 451.8 324 71.6
Sed0023841 Sechium edule HOM05D006546 ORTHO05D008362 6.2e-125 451.4 343 66.5
Sc26g0002400 Simmondsia chinensis HOM05D006546 ORTHO05D008362 6.2e-125 451.4 312 73.7
CAN.G264.10 Capsicum annuum HOM05D006546 ORTHO05D008362 4.5e-123 445.3 275 79.3
EL10Ac1g01586 Beta vulgaris HOM05D006546 ORTHO05D008362 5.8e-123 444.9 352 66.5
AUR62026675 Chenopodium quinoa HOM05D006546 ORTHO05D008362 9.9e-123 444.1 299 75.6
ATR0584G152 Amborella trichopoda HOM05D006546 ORTHO05D008362 1.1e-121 440.7 307 73.0
Oeu002061.1 Olea europaea HOM05D006546 ORTHO05D008362 3.3e-118 429.1 300 72.7
Zm00001eb407750 Zea mays HOM05D006546 ORTHO05D008362 3.1e-116 422.5 304 70.1
HPP92_004409 Vanilla planifolia HOM05D006546 ORTHO05D008362 4.0e-116 422.2 312 69.9
Peaxi162Scf00079g02332 Petunia axillaris HOM05D006546 ORTHO05D008362 2.0e-115 419.9 342 64.6
ClCG08G007080 Citrullus lanatus HOM05D006546 ORTHO05D008362 3.2e-113 412.5 417 53.7
Os12g0168000 Oryza sativa ssp. japonica HOM05D006546 ORTHO05D008362 2.5e-110 402.9 303 68.3
Mapoly0007s0250 Marchantia polymorpha HOM05D006546 ORTHO05D008362 2.8e-109 399.4 312 66.0
Pp3c18_17520 Physcomitrium patens HOM05D006546 ORTHO05D008362 2.8e-109 399.4 315 64.8
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 3.7e-109 399.1 307 65.8
MBI19_g24720_MAGBIO Magnolia biondii HOM05D006546 ORTHO05D008362 8.2e-109 397.9 485 49.1
CBR_g53679 Chara braunii HOM05D006546 ORTHO05D008362 1.8e-108 396.7 309 66.7
CARHR070270 Cardamine hirsuta HOM05D006546 ORTHO05D008362 9.7e-102 374.4 201 95.0
SMO340G0128 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.1e-100 370.9 289 64.7
Ciclev10001828m.g Citrus clementina HOM05D006546 ORTHO05D008362 2.4e-100 369.8 286 67.8
arahy.Tifrunner.gnm1.ann1.AD4V0Z Arachis hypogaea HOM05D006546 ORTHO05D008362 2.6e-99 366.3 422 50.0
Eucgr.F02694 Eucalyptus grandis HOM05D006546 ORTHO05D008362 1.9e-97 360.1 212 83.5
Cre13.g587450 Chlamydomonas reinhardtii HOM05D006546 ORTHO05D008362 1.2e-96 357.5 308 60.7
FAN27G2273 Fragaria x ananassa HOM05D006546 ORTHO05D008362 2.5e-89 333.2 217 78.8
CsaV3_6G005110 Cucumis sativus L. HOM05D006546 ORTHO05D008362 2.9e-82 309.7 322 53.7
MCO03G555 Micromonas commoda HOM05D006546 ORTHO05D008362 2.0e-78 297.0 319 52.4
THA.LOC104803355 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 4.4e-78 295.8 207 72.9
Dinv41054 Davidia involucrata HOM05D006546 ORTHO05D008362 1.3e-77 294.3 169 86.4
Ah.14g079510 Amaranthus hybridus HOM05D006546 ORTHO05D008362 3.1e-76 289.7 199 75.9
Gohir.A01G197500 Gossypium hirsutum HOM05D006546 ORTHO05D008362 2.9e-74 283.1 240 63.8
Gohir.D01G187700 Gossypium hirsutum HOM05D006546 ORTHO05D008362 8.5e-74 281.6 240 63.3
TPR.G39968 Trifolium pratense HOM05D006546 ORTHO05D008362 3.2e-73 279.6 166 83.7
THA.LOC104810664 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 1.0e-71 274.6 151 89.4
Ah.00g001170 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.4e-71 274.2 190 75.3
Ah.14g079490 Amaranthus hybridus HOM05D006546 ORTHO05D008362 3.0e-71 273.1 190 74.7
FAN24G0701 Fragaria x ananassa HOM05D006546 ORTHO05D008362 6.3e-69 265.4 188 74.5
TPR.G28004 Trifolium pratense HOM05D006546 ORTHO05D008362 6.3e-69 265.4 321 48.6
SMO137G0185 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 5.4e-68 262.3 258 49.6
RcHm_v2.0_Chr6g0274681 Rosa chinensis HOM05D006546 ORTHO05D008362 2.7e-67 260.0 167 78.4
THA.LOC104820721 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 8.9e-63 245.0 141 84.4
Glyma.02G080402 Glycine max HOM05D006546 ORTHO05D008362 2.9e-58 229.9 144 77.1
Eucgr.K02158 Eucalyptus grandis HOM05D006546 ORTHO05D008362 3.9e-58 229.6 188 63.8
SMO182G0010 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 4.3e-57 226.1 267 47.6
Ah.04g160680 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.3e-42 177.9 108 82.4
SEGI_13550 Sequoiadendron giganteum HOM05D006546 ORTHO05D008362 1.0e-34 151.8 97 73.2
MCO02G484 Micromonas commoda HOM05D006546 ORTHO05D008362 1.5e-30 137.9 238 35.3
CDE08G0315 Ceratophyllum demersum HOM05D006546 ORTHO05D008362 4.4e-30 136.3 111 63.1
ECA247G1774 Erigeron canadensis HOM05D006546 ORTHO05D000004 2.7e-27 127.1 80 77.5
SMO063G0001 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.7e-21 107.8 102 50.0
Hund17461 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.2e-20 103.2 258 32.6
Medtr6g037560 Medicago truncatula HOM05D006546 ORTHO05D008362 1.3e-13 81.6 48 77.1
AagrBONN_evm.TU.Sc2ySwM_228.4528 Anthoceros agrestis HOM05D006546 ORTHO05D008362 3.0e-10 70.5 57 63.2
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 2.8e-08 63.9 71 49.3


User provided reference genes

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