Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.1e-240 834.3 430 100.0
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.3e-230 802.7 430 95.3
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.5e-229 799.3 428 96.3
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 9.6e-229 796.6 428 93.7
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.8e-227 792.3 428 93.2
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 1.2e-226 789.6 430 93.3
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 4.4e-226 787.7 430 93.0
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 4.4e-226 787.7 430 93.0
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 9.9e-226 786.6 428 95.3
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 2.4e-224 781.9 430 94.2
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 1.2e-223 779.6 432 93.1
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.7e-223 778.5 430 92.8
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.2e-212 740.7 428 87.1
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.4e-208 729.6 430 85.6
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 4.8e-204 714.5 435 84.4
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.7e-199 698.7 431 84.2
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.1e-197 693.3 431 81.2
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 3.3e-197 691.8 431 80.7
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 1.3e-196 689.9 434 81.6
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.6e-196 689.5 431 82.8
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 2.2e-196 689.1 432 81.5
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.1e-195 686.8 432 82.6
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 1.1e-195 686.8 432 82.6
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 4.1e-195 684.9 431 82.4
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 5.3e-195 684.5 428 82.0
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 6.9e-195 684.1 432 82.2
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 2.0e-194 682.6 430 82.1
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 3.4e-194 681.8 431 81.7
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 4.5e-194 681.4 431 79.1
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 4.5e-194 681.4 432 81.9
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.0e-193 680.2 446 77.1
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 8.5e-193 677.2 437 80.5
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 8.5e-193 677.2 433 79.9
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.4e-192 676.4 429 80.0
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 2.5e-192 675.6 425 81.6
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.6e-191 672.9 434 81.6
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.6e-191 672.9 393 88.0
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 7.9e-191 670.6 393 85.8
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.4e-190 669.8 402 86.3
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.4e-190 669.8 393 85.2
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 6.7e-190 667.5 431 79.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 8.8e-190 667.2 434 81.1
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.1e-189 666.8 390 86.2
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.1e-189 666.8 380 86.6
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 4.3e-189 664.8 455 77.8
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 5.7e-189 664.5 370 90.0
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 9.7e-189 663.7 435 79.1
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 1.3e-188 663.3 410 83.9
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 3.7e-188 661.8 386 87.0
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 3.7e-188 661.8 434 80.4
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 4.8e-188 661.4 389 87.1
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 4.8e-188 661.4 442 77.4
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 8.2e-188 660.6 389 87.4
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.1e-187 660.2 430 80.9
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.4e-187 659.8 393 86.8
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 1.8e-187 659.4 410 83.7
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 3.1e-187 658.7 431 79.8
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 2.0e-186 656.0 431 81.2
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.6e-186 655.6 419 80.7
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 4.5e-186 654.8 431 79.1
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 5.9e-186 654.4 427 82.4
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.7e-185 652.9 432 79.4
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 2.2e-185 652.5 426 80.3
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 5.0e-185 651.4 384 87.8
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 8.5e-185 650.6 431 79.4
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 8.5e-185 650.6 385 86.0
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 8.5e-185 650.6 385 86.0
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.9e-184 649.4 455 76.5
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 5.5e-184 647.9 428 80.1
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 7.2e-184 647.5 400 83.8
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 7.2e-184 647.5 436 80.0
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.7e-183 645.6 385 86.5
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.7e-183 645.6 435 78.9
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 6.1e-183 644.4 365 89.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.8e-182 642.9 417 81.3
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 4.4e-181 638.3 403 80.9
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 5.7e-181 637.9 397 84.6
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.7e-180 636.3 383 81.7
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.7e-180 636.3 435 78.4
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 3.7e-180 635.2 415 80.7
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 3.7e-180 635.2 437 78.5
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 6.3e-180 634.4 432 78.2
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 5.3e-179 631.3 430 77.7
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.5e-176 622.5 428 77.3
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.2e-176 622.1 427 77.3
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.2e-176 621.7 385 82.1
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-175 619.4 385 83.9
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.6e-175 618.6 385 83.6
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.0e-174 617.1 383 83.6
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.0e-174 617.1 383 83.6
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.4e-174 616.7 336 89.3
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 5.2e-174 614.8 402 79.9
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 5.2e-174 614.8 364 86.8
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 8.8e-174 614.0 385 83.1
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 9.7e-173 610.5 328 90.9
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.8e-171 606.3 430 74.9
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 1.8e-171 606.3 394 78.2
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.2e-170 603.6 428 72.9
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.2e-170 603.6 394 77.9
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 2.6e-170 602.4 393 82.2
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 2.3e-166 589.3 382 77.7
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 3.0e-166 589.0 445 73.9
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 4.0e-166 588.6 445 73.5
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.0e-165 586.3 414 72.7
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 7.0e-163 577.8 402 70.6
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 5.9e-162 574.7 315 87.9
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 5.9e-162 574.7 420 69.0
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.5e-160 570.1 417 69.5
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 9.4e-160 567.4 384 79.4
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 2.7e-159 565.8 360 76.4
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.8e-158 563.1 410 70.7
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.0e-158 562.4 407 69.3
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.5e-157 560.1 431 69.8
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.8e-148 529.3 350 75.7
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 7.8e-146 521.2 371 76.0
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 1.3e-145 520.4 283 89.8
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 7.3e-144 514.6 430 63.7
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 7.3e-144 514.6 431 64.3
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.6e-143 513.5 429 63.6
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 8.0e-143 511.1 435 62.3
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.1e-142 509.2 374 69.0
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.5e-141 506.9 429 63.9
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 3.7e-140 502.3 431 61.9
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.9e-139 500.0 437 62.7
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 2.0e-138 496.5 428 61.4
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 7.8e-138 494.6 305 84.3
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 1.0e-137 494.2 427 62.1
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 1.0e-137 494.2 427 62.1
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.9e-136 490.0 429 61.3
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 9.5e-136 487.6 429 61.1
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 8.6e-129 464.5 268 84.7
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 4.7e-127 458.8 454 58.4
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 6.0e-122 441.8 378 59.8
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 2.3e-121 439.9 344 61.9
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.9e-120 436.8 279 79.6
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.1e-114 416.8 351 64.4
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 3.5e-114 416.0 312 66.3
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 8.7e-113 411.4 282 73.0
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 1.5e-112 410.6 328 69.8
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 4.2e-107 392.5 224 87.1
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-86 324.7 224 75.9
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 8.2e-79 298.5 234 69.2
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 5.7e-72 275.8 192 71.9
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 5.0e-68 262.7 201 65.2
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.2e-63 247.3 296 49.0
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 4.1e-62 243.0 276 49.3
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 4.2e-59 233.0 180 65.6
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 1.1e-56 224.9 180 63.9
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-54 218.4 140 72.9
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 2.3e-49 200.7 176 59.7
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.3e-49 200.7 311 38.9
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 7.5e-48 195.7 101 92.1
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 9.8e-48 195.3 177 58.2
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.4e-46 191.4 148 70.3
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 7.0e-46 189.1 101 89.1
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.0e-44 185.3 169 64.5
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.2e-43 180.3 100 88.0
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 5.5e-43 179.5 104 84.6
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 4.7e-42 176.4 176 55.7
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.0e-41 175.3 100 85.0
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 6.6e-36 156.0 76 94.7
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.6e-34 151.4 122 67.2
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.1e-34 151.0 77 89.6
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 6.1e-34 149.4 212 39.2
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.0e-33 148.7 135 61.5
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.9e-28 130.2 90 76.7
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 8.6e-28 129.0 72 88.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 8.9e-25 119.0 74 81.1
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.9e-19 101.3 106 55.7
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 9.5e-19 99.0 179 38.0
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 8.3e-15 85.9 49 87.8
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 1.6e-13 81.6 77 59.7
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 1.6e-13 81.6 77 59.7
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 2.5e-11 74.3 53 66.0
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-09 68.2 36 91.7
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 4.0e-09 67.0 59 62.7
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 1.4e-06 58.5 79 58.2


User provided reference genes

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