Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 3.0e-265 917.9 455 100.0
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 9.7e-256 886.3 455 95.4
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 6.5e-252 873.6 455 94.3
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 1.7e-247 859.0 474 89.5
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 3.7e-247 857.8 455 92.5
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 1.4e-246 855.9 455 92.5
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 1.6e-245 852.4 455 91.4
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.3e-244 849.4 466 90.3
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 3.2e-243 844.7 475 88.4
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 7.2e-243 843.6 484 87.2
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 4.7e-242 840.9 455 90.5
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 8.8e-241 836.6 455 89.7
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 2.4e-238 828.6 455 89.5
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 3.5e-229 798.1 447 86.4
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 8.3e-223 776.9 449 84.6
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 3.2e-222 775.0 412 92.7
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.5e-211 738.8 447 77.2
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 2.1e-210 735.7 445 78.4
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 2.3e-209 732.3 462 78.8
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 1.9e-206 722.6 450 75.6
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 2.1e-205 719.2 450 75.1
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 1.0e-204 716.8 447 75.4
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 1.1e-203 713.4 447 75.2
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 2.5e-203 712.2 454 74.9
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 9.5e-203 710.3 447 74.9
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.6e-202 709.5 447 74.7
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 1.6e-202 709.5 451 73.4
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.6e-202 709.5 453 74.2
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 2.1e-202 709.1 446 75.8
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 3.6e-202 708.4 447 74.5
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 8.1e-202 707.2 448 74.8
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 1.4e-201 706.4 455 73.8
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 1.8e-201 706.1 447 74.5
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 1.8e-201 706.1 449 74.4
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 2.3e-201 705.7 453 75.1
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 5.2e-201 704.5 447 74.7
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 6.8e-201 704.1 448 75.7
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.2e-200 703.4 480 72.5
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.2e-200 703.4 447 73.8
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 3.4e-200 701.8 447 74.9
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 7.6e-200 700.7 446 73.8
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 7.6e-200 700.7 447 74.3
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 7.6e-200 700.7 456 73.7
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.7e-199 699.5 447 73.6
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.7e-199 699.5 474 70.0
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.7e-199 699.5 448 74.8
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 2.2e-199 699.1 458 72.9
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.2e-199 699.1 447 73.8
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 2.9e-199 698.7 447 73.6
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 3.8e-199 698.4 449 73.5
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 4.9e-199 698.0 451 75.2
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 8.4e-199 697.2 453 73.5
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 1.4e-198 696.4 451 72.7
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 3.2e-198 695.3 454 74.2
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.2e-198 695.3 453 73.5
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.2e-197 693.3 452 71.9
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 3.5e-197 691.8 453 73.3
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 3.5e-197 691.8 446 74.0
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 4.6e-197 691.4 435 75.6
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.0e-196 690.3 449 73.7
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 1.3e-196 689.9 446 72.4
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 3.0e-196 688.7 448 72.3
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 3.0e-196 688.7 448 73.0
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 5.1e-196 688.0 447 72.5
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 5.1e-196 688.0 447 73.2
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 1.1e-195 686.8 458 70.7
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.9e-195 686.0 460 72.0
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 3.3e-195 685.3 412 78.2
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 4.3e-195 684.9 447 71.8
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 9.6e-195 683.7 478 69.0
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 2.1e-194 682.6 447 73.2
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 4.7e-194 681.4 454 72.2
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 8.1e-194 680.6 453 70.9
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 9.0e-193 677.2 448 71.2
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.5e-192 676.4 446 72.9
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 3.8e-191 671.8 431 74.5
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 4.9e-191 671.4 451 71.0
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 1.1e-190 670.2 445 71.2
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 7.1e-190 667.5 449 71.9
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 1.6e-189 666.4 447 69.8
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 4.6e-189 664.8 448 69.2
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 6.0e-189 664.5 446 70.9
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.5e-187 659.8 447 70.0
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 1.5e-187 659.8 449 71.3
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 2.5e-187 659.1 443 70.4
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 7.3e-187 657.5 465 67.5
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.3e-183 646.7 456 67.1
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 2.9e-183 645.6 452 69.0
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 5.4e-182 641.3 462 68.8
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.9e-179 632.9 499 65.1
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 2.1e-178 629.4 461 63.6
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 2.8e-178 629.0 451 69.4
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 3.1e-177 625.5 480 65.0
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 9.0e-177 624.0 447 67.6
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 3.4e-176 622.1 397 73.0
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 2.4e-174 615.9 481 62.4
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 3.2e-174 615.5 389 75.3
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 3.9e-172 608.6 388 72.9
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.3e-170 603.6 408 71.1
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 2.1e-170 602.8 454 72.5
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 2.5e-166 589.3 446 65.0
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 3.2e-166 589.0 380 73.9
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.6e-165 586.6 447 65.3
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 2.7e-165 585.9 459 64.5
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 5.9e-160 568.2 452 59.5
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 2.3e-156 556.2 426 61.7
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 2.2e-154 549.7 433 59.4
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.4e-150 537.0 429 59.7
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 8.8e-148 527.7 435 57.2
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.5e-147 526.9 320 77.8
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.2e-128 464.2 271 79.3
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.0e-115 420.2 447 51.5
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 3.1e-113 412.9 434 45.6
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 1.9e-110 403.7 441 47.4
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 1.1e-97 361.3 315 59.4
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 4.3e-94 349.4 370 51.6
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 7.8e-88 328.6 477 39.0
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 5.6e-86 322.4 181 82.9
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 9.9e-59 231.9 188 62.2
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 3.9e-55 219.9 348 38.5
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 7.4e-54 215.7 376 38.3
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.6e-53 214.5 108 88.0
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 5.7e-38 162.9 124 63.7
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 5.7e-38 162.9 408 32.4
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 2.8e-37 160.6 124 64.5
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 8.2e-37 159.1 137 62.0
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 3.3e-30 137.1 85 69.4
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.3e-29 135.2 69 88.4
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 8.2e-29 132.5 102 62.7
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 2.0e-27 127.9 127 50.4
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.1e-22 112.1 83 65.1
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 1.6e-19 101.7 75 62.7
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 2.0e-19 101.3 208 30.8
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 5.9e-19 99.8 67 68.7
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 6.5e-18 96.3 104 48.1
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 3.6e-16 90.5 70 58.6
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 1.4e-15 88.6 100 50.0
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 4.1e-12 77.0 63 60.3


User provided reference genes

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