Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 7.6e-289 996.5 520 100.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 3.9e-277 957.6 520 95.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.3e-272 942.6 520 93.1
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 7.2e-271 936.8 520 92.3
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.0e-260 902.1 520 89.4
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 8.0e-254 880.2 520 87.3
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 3.0e-253 878.2 520 87.7
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.8e-250 869.0 521 87.7
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 2.0e-249 865.5 521 87.1
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 3.5e-249 864.8 521 87.7
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.2e-248 862.1 520 86.3
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 5.5e-247 857.4 520 86.0
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.8e-235 818.5 520 82.9
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 5.0e-224 781.2 521 78.7
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 3.9e-160 568.9 521 58.7
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.2e-155 553.1 538 57.2
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 9.4e-154 547.7 537 56.6
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.0e-152 544.3 533 57.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 6.7e-152 541.6 532 56.2
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 8.8e-152 541.2 534 55.2
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 1.3e-150 537.3 530 55.8
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 2.8e-150 536.2 546 55.3
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 3.1e-149 532.7 544 54.8
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 4.1e-149 532.3 550 54.5
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.2e-148 530.8 540 55.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.7e-147 526.9 551 53.9
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.2e-146 522.7 530 54.9
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 3.0e-144 516.2 525 55.8
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 2.6e-143 513.1 549 53.2
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 9.7e-143 511.1 532 53.9
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 6.3e-142 508.4 549 54.5
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 6.3e-142 508.4 547 52.1
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 6.3e-142 508.4 552 52.9
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.8e-141 506.9 547 52.5
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 3.1e-141 506.1 536 53.7
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.2e-140 504.2 529 52.6
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 1.2e-140 504.2 539 51.9
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.0e-140 503.4 681 45.8
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.5e-140 502.3 531 52.7
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 4.5e-140 502.3 532 53.0
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.7e-139 500.4 535 52.0
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.7e-139 500.4 512 55.1
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 2.2e-139 500.0 531 52.7
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 6.5e-139 498.4 527 52.9
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.5e-139 498.4 537 51.8
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.5e-138 497.3 545 51.7
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 5.5e-138 495.4 540 53.1
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 9.4e-138 494.6 519 53.8
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 8.0e-137 491.5 537 52.3
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.3e-136 490.0 538 53.3
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.0e-136 489.2 538 53.3
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.5e-135 487.3 545 51.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 9.7e-135 484.6 549 51.4
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.7e-134 483.8 538 52.8
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 3.7e-134 482.6 513 53.0
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 4.1e-133 479.2 542 52.0
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 7.0e-133 478.4 538 52.8
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.6e-132 477.2 506 53.2
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.6e-132 477.2 514 52.9
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 3.5e-132 476.1 514 52.9
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.0e-131 472.2 514 52.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.5e-130 470.7 533 51.8
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.2e-129 467.6 572 48.6
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.8e-128 463.8 514 53.9
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.3e-128 463.4 536 51.9
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 4.0e-128 462.6 520 51.0
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.0e-127 460.3 523 49.9
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 9.8e-127 458.0 514 51.4
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.7e-126 457.2 539 50.5
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.4e-125 453.4 515 52.4
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.1e-125 452.6 535 50.1
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 5.4e-125 452.2 458 53.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 5.4e-125 452.2 539 50.5
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.2e-124 451.1 539 49.9
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.0e-123 448.0 503 53.7
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 2.9e-123 446.4 534 49.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 6.5e-123 445.3 531 49.7
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 6.5e-123 445.3 538 48.9
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.9e-122 443.7 530 49.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 2.5e-122 443.4 575 47.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 5.5e-122 442.2 451 54.8
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.6e-121 439.5 539 48.1
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 3.0e-120 436.4 475 52.2
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 6.8e-120 435.3 531 49.7
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.4e-117 427.6 438 52.7
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 7.0e-117 425.2 497 51.7
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.5e-114 417.5 514 48.6
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.0e-111 407.1 538 47.6
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.3e-107 394.4 538 45.4
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 5.0e-107 392.5 525 45.1
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.3e-102 377.9 431 48.5
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 6.0e-100 369.0 525 46.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 4.3e-98 362.8 349 54.7
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 2.8e-97 360.1 552 44.0
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 5.2e-96 355.9 540 42.6
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 2.0e-87 327.4 379 51.7
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.3e-86 324.7 312 56.7
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.8e-81 307.0 356 51.7
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.3e-78 298.1 468 42.9
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 4.9e-78 296.2 576 39.1
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.4e-78 295.8 546 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.2e-77 293.5 527 38.1
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 7.1e-77 292.4 365 48.2
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.3e-73 281.6 557 37.0
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 5.3e-72 276.2 283 55.1
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 4.6e-68 263.1 471 38.2
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.6e-65 254.6 319 48.6
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.0e-59 233.8 435 37.0
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 8.1e-57 225.7 275 48.7
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 8.1e-57 225.7 215 54.9
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.4e-56 224.2 379 38.8
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.2e-53 213.4 165 63.6
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 5.5e-53 213.0 276 46.4
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 9.3e-53 212.2 261 47.9
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 2.4e-48 197.6 417 35.0
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 2.5e-45 187.6 261 46.0
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.1e-44 183.0 158 61.4
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 6.1e-44 183.0 261 46.7
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 2.3e-43 181.0 335 38.5
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.8e-38 163.7 196 45.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 7.9e-36 156.0 158 52.5
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 3.3e-34 150.6 140 66.4
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 9.7e-34 149.1 155 52.3
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 9.1e-32 142.5 123 61.8
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 2.9e-30 137.5 185 45.4
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 8.5e-30 136.0 143 53.8
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.9e-29 134.8 117 59.0
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.0e-27 127.5 244 40.6
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.0e-19 102.4 191 41.9
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.2e-19 100.1 234 39.3
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.6e-18 97.8 112 51.8
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 8.2e-17 92.8 163 41.7
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.7e-14 85.1 109 49.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.4e-08 65.5 91 41.8
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.4e-08 65.5 91 41.8
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 1.0e-06 59.3 94 42.6


User provided reference genes

Program Settings