Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.4e-298 1028.9 532 100.0
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 8.7e-272 939.9 532 90.4
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.4e-268 927.9 532 90.0
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 6.0e-265 917.1 532 88.0
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.5e-263 912.5 532 88.2
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.3e-259 899.4 532 87.2
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.1e-245 853.2 532 82.5
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 7.7e-236 820.5 534 81.3
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.4e-232 809.7 534 80.1
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 3.0e-232 808.5 534 80.5
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 9.1e-229 797.0 532 78.9
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 6.3e-222 774.2 534 77.9
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 1.0e-211 740.3 540 72.0
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 4.5e-196 688.3 534 66.7
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.9e-194 682.9 531 66.5
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.5e-194 682.6 529 66.7
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 7.2e-194 681.0 529 66.5
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 9.5e-194 680.6 531 65.5
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 4.7e-193 678.3 535 65.2
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.0e-192 677.2 537 65.7
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 2.6e-191 672.5 537 66.5
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 3.4e-191 672.2 537 65.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.7e-190 669.8 528 64.8
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.8e-190 669.1 539 64.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 3.7e-190 668.7 535 64.3
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.4e-189 666.8 523 65.2
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.4e-189 666.8 538 64.3
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.4e-189 666.0 540 62.6
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 3.2e-189 665.6 535 64.5
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 9.2e-189 664.1 535 63.9
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.6e-188 663.3 535 63.9
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 4.5e-188 661.8 533 63.6
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 1.7e-187 659.8 529 63.7
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.9e-187 659.1 530 65.5
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 5.0e-187 658.3 533 64.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.9e-186 656.4 541 62.1
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 3.3e-186 655.6 535 63.0
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 9.5e-186 654.1 527 63.9
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 2.8e-185 652.5 532 62.4
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.4e-184 650.2 540 62.8
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 4.0e-184 648.7 524 63.7
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 5.2e-184 648.3 543 62.4
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 5.2e-184 648.3 531 63.1
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 2.0e-183 646.4 522 62.8
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.6e-183 646.0 558 60.0
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.3e-182 643.7 532 59.8
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 2.2e-182 642.9 523 64.6
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 3.7e-182 642.1 531 62.5
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.9e-182 641.7 561 60.8
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 5.4e-181 638.3 530 62.6
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 5.4e-181 638.3 523 63.3
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 7.0e-181 637.9 530 61.7
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.6e-180 636.7 528 62.7
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 6.0e-180 634.8 530 61.5
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 7.8e-180 634.4 532 59.2
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 2.3e-179 632.9 524 62.6
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.9e-178 629.8 539 60.3
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 3.3e-178 629.0 532 60.9
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 7.3e-178 627.9 547 60.9
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.2e-177 627.1 532 61.1
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 2.1e-177 626.3 533 60.4
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-175 620.5 575 58.4
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 4.4e-175 618.6 529 61.8
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 5.8e-175 618.2 534 60.3
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.7e-174 616.7 535 58.9
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 4.1e-173 612.1 585 56.2
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 7.1e-173 611.3 537 59.2
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 2.7e-172 609.4 532 59.6
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.0e-171 607.4 531 60.5
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 6.6e-171 604.7 521 59.9
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.4e-168 597.0 529 59.2
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.2e-167 594.0 538 57.4
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.2e-167 594.0 556 58.3
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.0e-167 593.2 533 60.4
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 5.4e-165 585.1 496 62.3
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 4.6e-164 582.0 531 57.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 8.6e-163 577.8 543 58.0
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 1.1e-162 577.4 450 65.3
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.5e-162 576.2 531 55.7
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-161 573.9 585 55.0
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 7.6e-159 564.7 545 56.7
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 8.4e-158 561.2 538 56.1
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.4e-157 560.5 442 66.7
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.6e-156 557.0 499 57.3
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 7.6e-151 538.1 530 53.2
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.5e-146 523.9 526 52.1
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.6e-143 513.1 532 52.4
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.9e-141 506.9 437 59.0
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.1e-136 491.1 531 51.0
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 5.1e-131 472.2 413 60.0
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.0e-128 461.5 401 60.8
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 2.0e-127 460.3 397 59.2
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 8.4e-126 454.9 573 48.0
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.1e-120 436.4 544 44.9
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 4.5e-119 432.6 547 44.8
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.7e-118 430.6 534 44.8
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 3.3e-106 389.8 355 56.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.3e-105 387.9 355 56.3
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.8e-104 384.0 506 44.7
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.0e-99 366.7 554 39.5
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.6e-92 344.4 549 38.6
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 2.3e-91 340.5 289 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.5e-90 337.8 476 41.2
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.9e-87 325.9 289 58.5
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.0e-74 284.3 283 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.5e-71 273.5 386 41.5
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.5e-66 258.1 560 32.3
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.9e-65 253.8 204 64.2
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 3.5e-63 246.9 577 32.2
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.4e-57 226.1 212 56.6
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 2.5e-53 214.2 548 30.3
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 7.3e-53 212.6 151 70.9
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.9e-49 199.9 156 66.7
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 8.6e-46 189.1 169 54.4
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 3.4e-42 177.2 135 68.9
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 2.1e-39 167.9 100 87.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 3.3e-37 160.6 135 61.5
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.3e-36 158.7 130 61.5
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 4.0e-35 153.7 126 57.9
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.9e-24 118.2 485 26.4
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.9e-24 118.2 113 54.9
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.1e-23 114.8 120 53.3
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 3.5e-23 114.0 100 65.0
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.8e-22 111.7 71 81.7
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.9e-21 108.2 87 69.0
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.9e-21 108.2 87 69.0
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 2.1e-20 104.8 85 61.2
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 9.3e-16 89.4 94 48.9
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 2.5e-13 81.3 114 48.2
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.5e-13 81.3 90 51.1
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 9.6e-13 79.3 87 59.8
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 2.8e-12 77.8 114 43.0
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.9e-09 67.8 73 46.6
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 5.0e-09 67.0 49 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.1e-08 65.9 296 27.4
TWI34G1250 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 3.0e-06 57.8 250 28.4
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 6.7e-06 56.6 35 77.1


User provided reference genes

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