Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 9.9e-243 843.6 621 100.0
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.9e-201 706.4 621 70.2
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 2.8e-181 639.4 623 63.1
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 2.0e-179 633.3 645 62.8
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 4.2e-177 625.5 614 64.3
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 3.9e-175 619.0 622 65.6
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 2.4e-172 609.8 618 64.9
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 8.8e-159 564.7 622 61.9
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 2.8e-157 559.7 623 61.5
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 3.7e-157 559.3 621 61.2
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 5.4e-156 555.4 621 60.7
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 2.3e-154 550.1 617 57.4
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 1.1e-145 521.2 609 59.6
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 4.0e-111 406.4 610 47.7
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 6.6e-106 389.0 618 46.6
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 3.7e-96 356.7 582 45.5
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 6.9e-95 352.4 616 44.0
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 6.9e-95 352.4 615 43.3
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 1.5e-94 351.3 628 43.8
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 1.0e-93 348.6 577 44.4
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 1.1e-92 345.1 580 45.5
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 1.4e-92 344.7 495 45.7
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 6.7e-90 335.9 581 48.2
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 6.5e-85 319.3 585 41.7
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 3.3e-73 280.4 625 45.1
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 1.3e-72 278.5 637 36.3
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 4.8e-72 276.6 574 40.9
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 4.8e-72 276.6 636 36.3
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.2e-70 271.9 604 39.6
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.0e-70 271.2 639 38.7
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 6.1e-67 259.6 629 35.3
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 3.9e-66 256.9 632 34.2
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 1.1e-65 255.4 627 44.2
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 3.7e-64 250.4 632 33.5
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 5.3e-63 246.5 624 38.8
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 1.2e-62 245.4 581 37.0
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 3.5e-62 243.8 617 33.9
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 7.7e-62 242.7 620 47.9
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.7e-61 241.5 624 34.3
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 1.7e-61 241.5 637 36.9
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 2.2e-61 241.1 627 31.4
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 2.9e-61 240.7 629 35.6
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 1.1e-60 238.8 620 32.7
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 1.5e-60 238.4 633 32.4
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 9.4e-60 235.7 613 34.7
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 1.2e-59 235.3 630 38.9
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 1.2e-59 235.3 649 43.3
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 1.4e-58 231.9 628 38.1
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 3.0e-58 230.7 630 33.0
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 6.7e-58 229.6 436 43.6
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 3.3e-57 227.3 628 31.4
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 1.3e-56 225.3 626 34.3
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 6.3e-56 223.0 622 35.5
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 1.8e-55 221.5 626 35.6
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 7.0e-55 219.5 629 30.2
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 2.9e-53 214.2 630 37.1
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 2.1e-51 208.0 623 31.3
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 2.1e-51 208.0 623 31.3
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 2.1e-51 208.0 618 31.2
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.0e-50 205.7 622 41.2
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 1.0e-50 205.7 623 41.3
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 6.8e-50 203.0 629 39.4
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 8.8e-50 202.6 625 40.8
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 1.5e-49 201.8 619 35.5
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.3e-48 198.7 627 36.4
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.7e-48 198.4 625 40.8
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 3.7e-48 197.2 632 29.6
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 6.3e-48 196.4 620 44.2
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 3.1e-47 194.1 632 32.0
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 3.1e-47 194.1 624 35.9
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.0e-46 191.4 626 32.6
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 2.7e-46 191.0 632 33.9
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 2.7e-46 191.0 576 37.8
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 3.5e-46 190.7 633 29.2
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 4.5e-46 190.3 632 33.9
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 4.5e-46 190.3 647 34.8
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.3e-45 188.7 631 33.9
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 1.7e-45 188.3 618 36.7
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 3.8e-45 187.2 573 33.9
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 8.5e-45 186.0 616 28.7
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 1.9e-44 184.9 621 28.8
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 2.5e-44 184.5 614 30.6
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 5.5e-44 183.3 490 39.4
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 5.5e-44 183.3 627 33.3
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 5.5e-44 183.3 653 30.0
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 1.2e-43 182.2 630 30.5
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 6.1e-43 179.9 636 29.2
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 1.8e-42 178.3 608 28.8
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 3.4e-41 174.1 443 34.5
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 2.8e-40 171.0 633 38.4
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 2.8e-40 171.0 576 38.4
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 2.8e-40 171.0 623 39.6
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 3.7e-40 170.6 622 28.3
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 1.1e-39 169.1 620 42.3
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 1.1e-39 169.1 641 39.9
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 1.4e-39 168.7 624 41.7
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 4.1e-39 167.2 629 37.5
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 2.7e-38 164.5 527 39.7
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 3.5e-38 164.1 641 31.2
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 4.5e-38 163.7 582 30.9
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 7.7e-38 162.9 620 40.0
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 3.3e-36 157.5 628 26.4
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 4.2e-36 157.1 634 38.5
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 1.6e-35 155.2 603 30.5
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 3.6e-35 154.1 621 30.0
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 1.8e-34 151.8 595 26.1
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 2.3e-34 151.4 628 30.6
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 3.0e-34 151.0 598 26.4
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 4.0e-34 150.6 341 35.8
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 8.9e-34 149.4 477 32.1
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 1.5e-33 148.7 627 28.1
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.2e-32 144.8 613 30.7
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 8.3e-32 142.9 611 33.1
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 2.4e-31 141.4 568 28.2
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 9.2e-31 139.4 570 30.0
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.0e-29 136.0 624 28.5
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 5.0e-29 133.7 580 27.2
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 1.5e-28 132.1 305 34.1
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 5.6e-28 130.2 197 44.2
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 5.6e-28 130.2 572 35.3
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.4e-26 125.6 466 25.5
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 3.4e-25 120.9 394 37.1
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.7e-24 118.6 623 30.7
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 1.7e-24 118.6 553 27.1
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 3.0e-21 107.8 584 29.1
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 3.9e-21 107.5 436 27.5
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 1.6e-19 102.1 630 25.4
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 3.1e-18 97.8 567 24.0
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 6.8e-18 96.7 215 39.1
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 4.4e-17 94.0 627 31.3
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 1.3e-16 92.4 183 41.0
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 2.4e-15 88.2 518 29.9
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 3.9e-13 80.9 210 37.1
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 1.1e-12 79.3 468 34.4
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 1.9e-12 78.6 102 47.1
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 3.3e-12 77.8 504 22.0
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 5.2e-10 70.5 122 38.5
A10p13080 Brassica napus HOM05D001827 ORTHO05D001790 6.8e-10 70.1 229 31.4
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 1.5e-09 68.9 200 30.0
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 4.4e-09 67.4 617 22.0
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 5.8e-09 67.0 211 31.8
C09p46840 Brassica napus HOM05D001827 ORTHO05D001790 5.8e-09 67.0 221 30.8
BolC9t57534H Brassica oleracea HOM05D001827 ORTHO05D001790 5.8e-09 67.0 221 30.8
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 1.3e-08 65.9 639 21.4
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 6.4e-08 63.5 124 38.7
Sp6g17740 Schrenkiella parvula HOM05D001827 ORTHO05D001790 6.4e-08 63.5 226 28.3
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 1.4e-07 62.4 546 29.3
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.9e-07 62.0 142 35.2
CARHR269240 Cardamine hirsuta HOM05D001827 ORTHO05D001790 3.2e-07 61.2 214 29.0
Lj8C179T7 Lonicera japonica HOM05D001827 ORTHO05D001790 3.2e-07 61.2 153 32.0
AUR62016893 Chenopodium quinoa HOM05D022647 ORTHO05D005456 4.1e-07 60.8 111 45.9
AUR62044563 Chenopodium quinoa HOM05D022647 ORTHO05D005456 4.1e-07 60.8 111 45.9
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 5.4e-07 60.5 137 35.0
Actinidia15899 Actinidia chinensis HOM05D004905 ORTHO05D005456 1.2e-06 59.3 90 40.0
AUR62039051 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.6e-06 58.9 112 44.6
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 1.6e-06 58.9 236 31.4
AUR62016892 Chenopodium quinoa HOM05D022647 ORTHO05D005456 2.1e-06 58.5 112 44.6
Carub.0008s1622 Capsella rubella HOM05D001827 ORTHO05D001790 2.7e-06 58.2 216 29.2
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 4.6e-06 57.4 153 32.0
Phvul.008G279900 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 6.0e-06 57.0 636 28.3


User provided reference genes

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