Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 0.0e+00 1159.8 625 100.0
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 5.9e-304 1047.0 626 90.3
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 6.3e-298 1026.9 627 88.4
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 1.9e-294 1015.4 627 86.4
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 1.9e-294 1015.4 626 87.4
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 9.5e-294 1013.1 626 86.9
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 2.1e-293 1011.9 627 87.2
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 2.6e-291 1005.0 625 87.7
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 5.7e-291 1003.8 628 86.9
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 1.7e-290 1002.3 626 86.9
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 1.8e-289 998.8 627 86.8
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 2.9e-287 991.5 625 86.7
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 5.2e-276 954.1 625 80.8
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 6.4e-242 840.9 627 74.2
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 5.5e-209 731.5 635 65.0
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 6.5e-194 681.4 629 61.7
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 8.5e-194 681.0 636 62.1
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 1.1e-193 680.6 645 60.6
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 3.2e-193 679.1 647 61.5
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 2.7e-192 676.0 616 62.3
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 4.0e-191 672.2 549 67.0
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 5.7e-190 668.3 604 62.4
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 9.7e-190 667.5 640 60.2
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.1e-188 664.1 538 66.7
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 1.8e-188 663.3 549 66.3
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 9.1e-188 661.0 655 59.5
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 2.7e-187 659.4 631 60.7
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 3.5e-187 659.1 632 60.8
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 1.2e-184 650.6 567 63.0
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 2.1e-184 649.8 648 59.6
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 1.7e-181 640.2 715 55.4
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 1.7e-181 640.2 643 58.0
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 6.3e-181 638.3 663 58.2
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 1.8e-180 636.7 544 64.5
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 3.5e-179 632.5 594 60.6
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 4.2e-177 625.5 587 60.8
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 5.5e-177 625.2 533 63.2
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 2.8e-176 622.9 634 57.9
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 3.6e-176 622.5 604 59.6
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 3.6e-176 622.5 622 57.7
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 1.8e-175 620.2 600 57.3
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 3.0e-175 619.4 580 59.5
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 3.0e-175 619.4 640 56.6
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 4.0e-175 619.0 543 64.1
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 1.2e-174 617.5 593 58.5
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 9.8e-174 614.4 543 61.5
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 1.7e-173 613.6 543 62.4
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 1.7e-173 613.6 639 56.3
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 2.8e-173 612.8 544 62.1
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 1.4e-172 610.5 643 57.2
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 9.2e-172 607.8 632 55.9
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 9.2e-172 607.8 545 60.7
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 9.2e-172 607.8 652 55.7
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.6e-171 607.1 538 62.3
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 4.5e-171 605.5 530 60.9
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 7.8e-171 604.7 595 58.8
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 7.8e-171 604.7 614 58.0
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 1.7e-170 603.6 634 56.8
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 2.9e-170 602.8 546 60.4
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 5.0e-170 602.1 615 56.7
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 6.6e-170 601.7 545 59.6
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 2.5e-169 599.7 546 60.1
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 1.0e-167 594.3 547 60.7
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 4.0e-167 592.4 528 62.9
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 6.8e-167 591.7 601 57.9
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 7.5e-166 588.2 632 55.2
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 1.7e-165 587.0 593 56.8
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 2.2e-165 586.6 606 57.3
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 6.4e-165 585.1 609 58.0
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 1.9e-164 583.6 615 56.3
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.0e-162 577.8 645 52.7
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 1.3e-162 577.4 546 59.0
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 1.2e-160 570.9 545 58.9
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 4.0e-159 565.8 571 56.0
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 1.4e-156 557.4 642 54.8
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 4.1e-156 555.8 549 58.5
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 5.4e-156 555.4 528 59.1
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 2.7e-147 526.6 551 54.6
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 1.8e-143 513.8 604 50.5
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 8.4e-141 505.0 469 59.3
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 2.3e-138 496.9 591 53.8
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 6.2e-136 488.8 536 55.8
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 4.2e-132 476.1 463 58.3
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 4.0e-127 459.5 555 50.3
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 3.7e-120 436.4 475 56.0
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 5.1e-114 416.0 541 45.7
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 5.6e-113 412.5 581 45.3
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 6.5e-109 399.1 466 53.9
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 2.4e-103 380.6 482 53.3
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 2.6e-102 377.1 401 57.9
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 2.5e-100 370.5 316 62.3
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 1.1e-97 361.7 381 58.3
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 2.0e-97 360.9 473 49.7
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 4.3e-97 359.8 381 58.0
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 1.6e-83 314.7 382 49.5
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 1.1e-81 308.5 528 40.3
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 4.5e-70 270.0 568 35.7
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 1.7e-56 224.9 281 50.2
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 1.5e-52 211.8 166 68.1
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 3.7e-48 197.2 529 31.8
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 2.5e-36 157.9 143 58.0
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 9.5e-36 156.0 125 61.6
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 8.9e-34 149.4 97 73.2
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 2.1e-30 138.3 135 53.3
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 4.6e-30 137.1 109 62.4
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 5.1e-29 133.7 95 69.5
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 1.1e-26 125.9 331 27.5
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 2.6e-25 121.3 161 45.3
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 2.8e-19 101.3 119 48.7
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 1.2e-17 95.9 59 72.9
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 2.6e-17 94.7 127 51.2
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 2.1e-14 85.1 123 44.7
CBR_g52391 Chara braunii HOM05D006816 ORTHO05D008666 3.9e-13 80.9 191 31.4


User provided reference genes

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