Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 0.0e+00 1238.0 632 100.0
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 0.0e+00 1082.8 637 89.5
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 8.9e-300 1033.1 638 85.4
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.2e-293 1012.7 634 85.0
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 5.8e-291 1003.8 634 84.5
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 6.6e-287 990.3 633 82.0
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 4.2e-265 917.9 635 76.9
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 7.9e-264 913.7 637 76.5
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.8e-263 912.5 637 76.3
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.5e-262 908.7 634 76.2
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 3.3e-262 908.3 634 76.2
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 1.1e-260 903.3 643 76.4
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.3e-245 853.2 672 69.6
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 8.8e-239 830.5 638 70.4
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.5e-238 829.7 646 70.0
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 9.7e-238 827.0 638 70.5
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.2e-237 825.9 637 70.8
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 3.1e-236 822.0 642 70.1
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 1.5e-230 803.1 638 68.8
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 4.4e-230 801.6 638 68.8
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 4.2e-225 785.0 614 70.5
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 4.2e-225 785.0 644 68.3
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 8.0e-224 780.8 638 66.9
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 1.8e-223 779.6 637 68.1
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.4e-220 770.0 559 73.3
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 5.9e-219 764.6 673 64.0
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.8e-199 699.9 609 61.6
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 2.3e-199 699.5 655 57.7
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 3.1e-199 699.1 668 58.8
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 5.2e-199 698.4 655 57.9
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 8.9e-199 697.6 666 57.8
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 2.0e-198 696.4 660 59.5
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.2e-195 687.2 685 56.9
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 4.6e-195 685.3 715 55.2
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.3e-194 683.7 641 58.7
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 8.6e-194 681.0 606 60.1
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.9e-193 679.9 665 56.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.5e-193 679.5 598 61.4
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 4.3e-193 678.7 660 57.7
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 7.3e-193 677.9 604 61.8
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 9.5e-193 677.6 611 61.0
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 2.8e-192 676.0 664 56.9
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 4.7e-192 675.2 595 61.3
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.2e-192 674.9 639 58.5
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.1e-191 674.1 598 60.7
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.8e-191 673.3 639 58.4
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.3e-191 672.9 639 58.4
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.1e-191 672.5 612 60.5
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 5.2e-191 671.8 612 59.6
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 6.8e-191 671.4 674 55.6
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 2.0e-190 669.8 662 56.6
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 5.8e-190 668.3 667 57.0
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 9.9e-190 667.5 642 56.5
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.7e-189 666.8 608 57.9
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.1e-188 664.1 674 54.9
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 4.1e-188 662.1 672 55.1
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 4.6e-187 658.7 669 55.2
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.0e-186 657.5 656 55.6
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.0e-186 657.5 671 56.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.3e-186 657.1 675 54.7
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.7e-186 656.8 610 59.2
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.7e-186 656.8 595 59.7
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 3.9e-186 655.6 661 55.7
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 8.6e-186 654.4 658 55.2
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 2.5e-185 652.9 665 55.3
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 4.3e-185 652.1 670 55.2
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 5.6e-185 651.7 603 59.5
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 9.5e-185 651.0 670 53.7
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 1.4e-183 647.1 679 52.7
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.3e-181 640.6 606 59.2
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.2e-181 639.8 676 54.4
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 3.8e-181 639.0 602 58.8
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 6.4e-181 638.3 666 54.2
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 6.4e-181 638.3 666 54.2
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.7e-179 632.9 664 54.7
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 2.7e-179 632.9 555 60.9
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 2.3e-178 629.8 577 58.2
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 9.6e-177 624.4 663 52.9
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 2.1e-176 623.2 598 57.0
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 8.1e-176 621.3 644 54.7
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 7.6e-174 614.8 590 55.6
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 9.9e-174 614.4 595 57.1
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 8.4e-173 611.3 665 52.2
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.1e-172 610.9 651 52.1
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 4.6e-171 605.5 669 51.3
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.3e-170 604.0 651 52.5
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 6.6e-170 601.7 673 52.9
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.5e-169 599.7 673 53.0
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 8.1e-168 594.7 589 57.4
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 3.1e-167 592.8 589 57.4
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 4.5e-166 589.0 589 56.9
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 8.4e-165 584.7 629 53.3
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 1.9e-164 583.6 670 52.8
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 2.4e-164 583.2 586 54.3
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.6e-163 580.5 583 54.0
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 7.4e-161 571.6 582 52.9
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.3e-160 570.9 543 55.4
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 4.0e-159 565.8 616 53.2
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.5e-158 562.4 499 60.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 5.8e-158 562.0 665 50.1
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 2.4e-156 556.6 605 51.6
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 3.5e-155 552.7 668 47.9
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 4.6e-155 552.4 636 50.6
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 4.6e-155 552.4 597 52.4
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 3.9e-154 549.3 532 54.5
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 2.5e-153 546.6 607 50.6
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.1e-151 541.2 648 48.5
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 6.9e-151 538.5 666 46.7
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 4.2e-148 529.3 568 50.2
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.3e-146 524.2 668 46.7
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 3.3e-145 519.6 618 47.6
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 8.2e-144 515.0 676 46.6
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 1.3e-141 507.7 695 43.6
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 8.5e-141 505.0 553 50.6
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 3.9e-138 496.1 452 59.5
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 6.3e-136 488.8 573 48.9
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.4e-132 477.6 623 46.1
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 6.7e-130 468.8 636 45.3
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 4.7e-123 446.0 370 65.4
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 5.7e-121 439.1 654 44.2
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 7.0e-119 432.2 319 72.1
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 8.5e-117 425.2 619 41.7
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.1e-111 408.3 659 39.6
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 2.5e-108 397.1 217 88.5
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.8e-103 380.9 242 79.8
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 1.2e-102 378.3 634 41.6
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 8.3e-88 328.9 544 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 7.0e-87 325.9 566 36.0
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.1e-82 310.5 605 35.0
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.4e-79 301.6 631 33.8
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 3.5e-78 297.0 420 39.3
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 1.4e-74 285.0 308 51.3
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 3.6e-59 233.8 130 90.0
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 2.2e-40 171.4 254 42.5
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 2.0e-17 95.1 543 21.9
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.4e-13 82.4 66 69.7
A07p40740 Brassica napus HOM05D005308 ORTHO05D006494 1.9e-07 62.0 41 82.9
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.5e-07 61.6 51 60.8
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 4.2e-07 60.8 198 29.3


User provided reference genes

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