Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 0.0e+00 1316.2 650 100.0
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 0.0e+00 1132.5 661 85.2
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 0.0e+00 1077.4 668 81.9
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.5e-310 1068.9 667 81.0
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 1.5e-297 1025.8 668 78.4
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 4.9e-285 984.2 678 73.7
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.1e-283 978.8 611 82.5
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 4.6e-283 977.6 679 74.4
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 9.9e-278 959.9 683 72.6
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 2.2e-269 932.2 634 74.1
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.2e-269 932.2 676 71.0
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 6.6e-266 920.6 671 71.1
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.1e-265 919.8 693 68.1
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 2.4e-260 902.1 675 68.3
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 9.3e-260 900.2 676 68.3
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 3.5e-259 898.3 669 69.7
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 1.0e-258 896.7 679 67.7
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 9.9e-254 880.2 706 65.0
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.2e-253 879.0 635 70.4
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.7e-224 783.1 578 70.2
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 3.1e-223 778.9 662 61.8
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 5.0e-197 691.8 712 54.2
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 1.1e-196 690.6 708 52.4
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 3.3e-196 689.1 698 53.0
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 8.9e-194 681.0 653 54.1
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.2e-193 680.6 539 65.7
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 4.1e-191 672.2 698 52.1
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.7e-189 666.8 700 51.4
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 3.8e-189 665.6 708 52.1
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.1e-188 664.1 705 51.1
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 9.5e-188 661.0 716 49.9
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.8e-187 659.4 689 51.7
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 6.8e-186 654.8 699 51.6
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.4e-185 652.5 714 50.8
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 9.8e-185 651.0 700 51.1
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.3e-184 650.6 705 51.5
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 2.9e-184 649.4 701 50.9
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 6.0e-182 641.7 693 51.8
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 5.0e-181 638.6 703 50.8
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 8.6e-181 637.9 706 50.8
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.5e-180 637.1 693 51.8
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.2e-179 634.0 710 50.1
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 2.1e-179 633.3 675 51.1
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 2.8e-179 632.9 693 51.5
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.4e-178 630.6 670 51.6
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.2e-177 627.5 700 49.7
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 3.4e-177 625.9 709 49.2
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 7.5e-177 624.8 492 67.7
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.8e-177 624.4 668 51.0
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 4.9e-176 622.1 713 48.8
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 6.6e-173 611.7 715 48.1
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 6.6e-173 611.7 700 49.4
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 5.6e-172 608.6 704 48.9
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.8e-170 603.6 648 49.5
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.3e-170 603.2 701 49.6
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.0e-169 600.1 698 47.3
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 3.4e-169 599.4 671 49.6
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 4.4e-169 599.0 710 46.9
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 1.3e-168 597.4 700 48.1
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.7e-168 597.0 631 52.5
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 3.7e-168 595.9 723 47.9
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.4e-167 594.0 700 48.6
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 9.2e-167 591.3 698 46.7
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.3e-165 587.4 708 45.6
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 5.1e-165 585.5 712 46.1
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 8.6e-165 584.7 704 47.0
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 1.5e-164 583.9 699 46.4
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.5e-164 583.2 648 48.8
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 9.5e-164 581.3 734 45.0
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.8e-163 579.7 668 48.4
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 3.6e-163 579.3 705 45.0
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 3.6e-163 579.3 687 46.0
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 8.1e-163 578.2 697 47.5
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.7e-160 570.5 751 45.1
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 3.2e-159 566.2 700 44.6
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 5.4e-159 565.5 701 44.5
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.0e-157 561.2 696 45.3
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 1.0e-157 561.2 732 43.6
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 3.0e-157 559.7 697 43.6
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 3.9e-157 559.3 722 44.0
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 3.6e-155 552.7 704 45.0
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 5.8e-153 545.4 670 44.2
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.7e-152 543.9 682 44.4
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 5.4e-151 538.9 656 47.7
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 5.1e-149 532.3 704 46.6
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.4e-143 514.2 656 45.9
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 9.3e-143 511.5 702 42.5
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 1.6e-142 510.8 710 42.1
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.1e-139 500.4 723 41.9
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.1e-138 498.0 702 41.0
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.8e-138 497.3 701 41.4
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.8e-138 497.3 548 52.6
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.0e-137 493.8 755 38.4
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.1e-134 483.8 658 41.9
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 8.2e-131 471.9 681 39.4
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 5.5e-127 459.1 683 41.4
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 6.7e-125 452.2 346 66.8
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 2.0e-121 440.7 675 40.6
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 5.3e-114 416.0 658 38.0
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.4e-111 407.9 767 35.2
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.0e-109 401.7 765 35.0
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 6.7e-109 399.1 508 47.0
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 2.2e-107 394.0 648 36.4
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 1.5e-103 381.3 513 44.8
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 2.5e-103 380.6 518 45.2
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.8e-101 374.4 632 36.4
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 4.4e-100 369.8 738 34.7
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 5.2e-93 346.3 470 44.0
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.3e-91 341.7 756 31.1
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 9.1e-90 335.5 338 53.3
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.6e-89 334.7 270 60.0
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 4.5e-89 333.2 248 62.9
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 7.7e-89 332.4 609 35.8
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.9e-87 327.8 373 45.6
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.8e-78 297.4 466 41.2
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.5e-71 275.0 213 62.0
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 3.1e-69 267.3 481 36.2
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 5.8e-60 236.5 336 38.7
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.4e-58 231.9 339 43.4
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.8e-43 180.6 119 66.4
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 7.8e-41 172.9 287 36.6
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.8e-21 108.6 156 43.6
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 2.4e-21 108.2 103 57.3
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 4.9e-19 100.5 97 56.7
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 4.6e-17 94.0 136 43.4
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 8.7e-16 89.7 124 44.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 4.3e-15 87.4 132 43.9
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 2.4e-13 81.6 99 46.5
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 9.0e-13 79.7 127 37.8
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.2e-11 75.1 79 50.6
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 3.8e-11 74.3 80 51.2
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.3e-06 59.3 101 31.7
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 8.2e-06 56.6 38 68.4


User provided reference genes

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