Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 0.0e+00 1253.8 680 100.0
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.0e-310 1068.5 676 84.6
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 6.6e-309 1063.5 677 86.6
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.5e-308 1062.4 676 84.0
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 4.3e-308 1060.8 677 86.1
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 4.3e-308 1060.8 677 86.1
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.3e-304 1049.3 678 83.0
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-302 1042.3 679 85.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.0e-301 1038.1 680 83.7
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 6.7e-301 1036.9 678 85.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 6.7e-301 1036.9 678 85.1
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.9e-276 955.7 682 76.7
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.3e-261 905.6 595 84.0
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.7e-254 882.1 689 72.0
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 3.4e-228 795.4 463 91.8
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.0e-225 786.2 681 64.6
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 3.5e-225 785.4 686 63.6
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 4.6e-225 785.0 685 63.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 7.8e-225 784.3 687 64.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.0e-224 783.9 682 63.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.3e-224 783.5 680 62.5
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.5e-223 780.0 684 62.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 3.6e-222 775.4 680 63.7
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.2e-222 774.6 683 62.4
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 2.3e-221 772.7 687 62.0
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 5.2e-221 771.5 683 62.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 8.9e-221 770.8 682 62.0
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.4e-220 768.5 688 62.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 5.8e-220 768.1 682 60.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.9e-219 765.8 682 61.9
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.9e-218 763.1 675 63.1
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.2e-218 762.3 677 60.9
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 9.2e-218 760.8 683 61.2
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.6e-217 760.0 683 61.9
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.0e-217 759.6 684 61.8
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 2.7e-217 759.2 682 60.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-217 759.2 683 59.9
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-217 759.2 683 59.9
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 4.6e-217 758.4 682 59.4
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 6.0e-217 758.1 688 61.2
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.9e-216 755.4 681 61.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.1e-215 753.8 684 60.8
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 7.3e-215 751.1 675 63.6
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.2e-214 750.4 684 60.4
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.2e-212 743.8 683 60.6
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.6e-212 742.7 681 61.2
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.3e-211 740.3 680 61.6
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.7e-211 740.0 685 61.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.2e-211 739.6 682 59.2
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.2e-211 739.6 683 62.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 6.4e-211 738.0 686 59.5
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 3.2e-210 735.7 686 60.2
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.1e-210 735.3 682 59.4
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-210 735.3 682 58.9
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-210 735.3 677 60.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 7.1e-210 734.6 688 59.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 9.2e-210 734.2 680 60.4
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.1e-209 733.0 685 60.1
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.3e-208 729.6 677 59.5
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.0e-208 729.2 683 58.6
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 5.1e-208 728.4 683 60.2
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.5e-207 726.9 681 59.5
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 3.3e-207 725.7 687 58.1
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 5.2e-205 718.4 682 58.5
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.0e-204 716.5 680 57.8
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.7e-203 713.4 678 59.0
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 4.9e-203 711.8 687 56.5
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.4e-202 710.3 685 58.2
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.2e-202 709.1 685 58.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.5e-201 705.7 681 60.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.8e-201 704.5 681 59.5
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.9e-199 699.9 696 58.8
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 5.6e-199 698.4 694 56.8
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.4e-197 693.7 687 57.5
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 6.4e-195 684.9 692 57.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.9e-194 683.3 680 57.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.4e-194 682.9 695 56.1
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.4e-194 682.9 683 55.6
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 3.2e-194 682.6 686 55.1
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.0e-192 677.6 688 55.8
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.7e-192 676.8 707 54.9
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.3e-192 676.4 681 58.9
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 6.2e-190 668.3 680 56.9
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.0e-188 663.3 706 54.0
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.1e-186 657.5 671 56.2
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.8e-182 642.9 629 57.6
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.4e-180 636.0 672 53.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 4.9e-179 632.1 687 52.0
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.1e-177 626.7 684 53.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.1e-175 620.9 703 52.5
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 7.4e-175 618.2 688 52.0
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 8.2e-174 614.8 773 47.5
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 8.4e-171 604.7 698 50.4
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.1e-169 600.1 656 51.5
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.3e-166 588.6 684 51.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.2e-164 584.3 675 50.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 5.5e-162 575.5 689 47.6
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 9.1e-157 558.1 606 54.1
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 6.1e-153 545.4 690 48.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.0e-151 540.4 680 51.0
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.1e-149 531.6 606 51.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.9e-139 500.0 683 45.1
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.8e-139 499.6 402 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.7e-132 476.9 727 40.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.3e-120 437.2 664 42.2
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.3e-118 431.4 706 39.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 3.8e-115 419.9 707 40.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.5e-111 405.6 387 59.9
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.1e-109 399.8 486 50.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.4e-109 399.4 443 52.4
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.7e-102 376.7 324 60.2
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 9.2e-101 372.1 318 60.1
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.0e-91 342.0 453 49.7
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 4.3e-90 336.7 226 77.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 4.3e-90 336.7 293 59.4
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.8e-89 334.0 563 36.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.4e-88 330.9 443 45.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 9.9e-79 298.9 335 50.4
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.1e-73 281.2 328 54.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 2.1e-73 281.2 200 70.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 6.9e-72 276.2 297 58.9
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-67 261.5 227 56.8
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.5e-58 231.1 272 55.1
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 9.0e-56 222.6 274 55.8
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.9e-53 214.9 276 54.0
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-51 208.8 423 41.4
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.0e-51 207.6 150 66.7
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 3.7e-49 200.7 778 29.4
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.5e-45 188.0 194 62.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 3.7e-41 174.1 197 62.9
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-40 172.6 200 62.0
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.8e-38 164.1 156 53.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 2.1e-36 158.3 109 73.4
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-32 145.2 118 71.2
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-29 135.6 182 42.3
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 3.6e-28 131.0 86 75.6
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.6e-28 131.0 86 75.6
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.8e-24 118.6 102 57.8
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.4e-24 118.2 73 68.5
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.4e-24 118.2 444 28.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 7.2e-21 106.7 521 25.0
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.1e-20 105.1 118 48.3
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 8.0e-20 103.2 462 23.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.3e-16 90.5 106 47.2
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 5.3e-16 90.5 58 74.1
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.0e-16 90.1 76 64.5
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 5.0e-14 84.0 115 49.6
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 8.8e-11 73.2 55 60.0
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.0e-10 72.0 60 56.7
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.4e-10 71.2 63 49.2
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.8e-09 67.4 49 61.2
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 8.3e-09 66.6 61 55.7
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 8.3e-09 66.6 61 55.7
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.4e-08 65.1 50 58.0
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.1e-08 64.7 123 35.8
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.1e-08 64.7 58 55.2
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.2e-07 62.8 65 47.7
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.9e-07 60.5 39 79.5
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 7.7e-07 60.1 46 63.0
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.7e-06 58.9 46 63.0
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.3e-06 58.5 46 63.0


User provided reference genes

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