Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 2.9e-91 338.6 172 100.0
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.5e-76 289.7 173 86.7
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.9e-71 272.7 173 82.1
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 1.9e-71 272.7 173 82.1
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-69 266.9 173 80.9
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 1.4e-69 266.5 172 78.5
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.6e-68 262.3 173 78.0
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.3e-67 260.0 173 80.3
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 2.2e-67 259.2 171 80.7
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 3.8e-67 258.5 173 79.2
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 3.8e-67 258.5 173 79.2
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 8.4e-67 257.3 173 79.2
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 3.0e-64 248.8 173 74.0
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 6.4e-59 231.1 172 70.3
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 2.6e-44 182.6 102 90.2
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 2.6e-44 182.6 102 90.2
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.2e-43 179.5 116 81.9
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 7.1e-42 174.5 204 51.5
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 2.4e-37 159.5 214 44.4
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.3e-35 153.7 226 42.0
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 1.3e-35 153.7 210 45.2
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 4.9e-35 151.8 203 43.8
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 8.4e-35 151.0 198 47.5
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.1e-34 150.6 222 41.0
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.4e-34 150.2 199 44.2
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.9e-34 149.8 196 46.4
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.9e-34 149.8 225 42.7
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 2.5e-34 149.4 213 41.8
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 7.1e-34 147.9 211 44.1
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.6e-33 146.7 211 44.5
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 1.6e-33 146.7 195 42.6
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 3.5e-33 145.6 205 42.4
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 3.5e-33 145.6 191 44.0
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.5e-33 145.6 211 44.5
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 3.5e-33 145.6 195 42.1
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 4.6e-33 145.2 216 44.4
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 6.0e-33 144.8 216 41.2
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 7.9e-33 144.4 208 42.3
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.0e-32 144.1 175 44.6
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.0e-32 144.1 218 40.4
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 1.0e-32 144.1 210 41.4
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 1.0e-32 144.1 213 41.8
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.3e-32 143.7 218 43.1
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.8e-32 143.3 191 44.5
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 2.3e-32 142.9 214 41.6
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 2.3e-32 142.9 205 42.4
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 3.9e-32 142.1 203 41.9
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 3.9e-32 142.1 226 38.1
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 3.9e-32 142.1 177 44.6
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 8.7e-32 141.0 225 40.4
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 8.7e-32 141.0 207 42.0
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.5e-31 140.2 213 40.8
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.5e-31 140.2 213 40.8
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.5e-31 140.2 213 40.8
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.5e-31 140.2 224 40.6
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 3.3e-31 139.0 192 42.7
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.3e-31 138.7 207 41.1
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 5.7e-31 138.3 220 41.4
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 7.4e-31 137.9 171 44.4
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 7.4e-31 137.9 225 40.4
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 9.7e-31 137.5 214 41.6
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 9.7e-31 137.5 228 41.2
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 9.7e-31 137.5 199 41.7
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.2e-30 136.3 175 44.6
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 3.7e-30 135.6 180 41.7
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 4.8e-30 135.2 210 38.6
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 6.3e-30 134.8 175 44.0
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 6.3e-30 134.8 191 41.4
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 6.3e-30 134.8 192 41.1
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 6.3e-30 134.8 196 40.8
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 1.1e-29 134.0 209 40.7
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.1e-29 134.0 175 45.1
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.4e-29 133.7 221 38.9
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 1.4e-29 133.7 222 39.2
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.8e-29 133.3 175 45.1
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.4e-29 132.9 217 40.6
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.1e-29 132.5 175 42.9
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 3.1e-29 132.5 205 41.5
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 4.1e-29 132.1 194 40.7
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 6.9e-29 131.3 197 41.1
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 6.9e-29 131.3 227 37.0
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 2.0e-28 129.8 220 37.7
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.0e-28 129.8 220 37.7
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 2.6e-28 129.4 217 40.1
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 4.5e-28 128.6 223 37.7
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 7.6e-28 127.9 218 39.4
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 7.6e-28 127.9 215 37.7
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 7.6e-28 127.9 238 35.7
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 1.0e-27 127.5 221 39.8
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.0e-27 127.5 217 39.6
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.0e-27 127.5 229 38.4
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.7e-27 126.7 227 38.3
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.2e-27 126.3 226 36.7
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.2e-27 126.3 217 39.6
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 5.0e-27 125.2 218 36.7
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 6.5e-27 124.8 221 37.6
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 6.5e-27 124.8 213 39.0
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 6.5e-27 124.8 200 37.5
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 2.5e-26 122.9 172 40.1
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.6e-25 120.2 171 38.6
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 2.7e-25 119.4 171 40.4
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 6.1e-25 118.2 171 39.8
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 7.9e-25 117.9 251 32.7
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 7.9e-25 117.9 173 38.7
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 1.5e-23 113.6 175 42.3
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 3.3e-23 112.5 105 58.1
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.1e-21 107.5 175 42.3
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 5.9e-20 101.7 226 31.4
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.6e-17 93.6 180 36.1
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.1e-17 93.2 177 37.9
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.7e-17 92.0 94 51.1
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.0e-16 90.9 53 83.0
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.8e-14 82.8 202 31.2
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.8e-13 80.1 138 37.7
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.5e-12 77.0 198 30.8
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 3.4e-12 75.9 89 42.7
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 1.4e-10 70.5 90 43.3
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.2e-10 68.9 151 35.1
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 6.7e-08 61.6 37 67.6
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 2.6e-07 59.7 137 32.1


User provided reference genes

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