Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.1e-81 304.3 148 100.0
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.6e-58 228.4 133 83.5
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.7e-58 228.0 134 82.8
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.8e-57 226.1 134 82.1
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 8.8e-57 223.8 135 83.7
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.5e-56 223.0 133 81.2
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 2.0e-56 222.6 134 82.8
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 5.7e-56 221.1 135 81.5
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 7.5e-56 220.7 134 81.3
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.3e-55 219.9 135 82.2
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 6.3e-55 217.6 134 82.8
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 8.2e-55 217.2 133 79.7
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 9.1e-54 213.8 133 79.7
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.7e-53 212.2 133 77.4
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.9e-53 211.1 133 78.2
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 1.0e-52 210.3 133 78.2
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.0e-52 210.3 133 78.2
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 8.5e-52 207.2 134 79.1
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 2.1e-50 202.6 119 82.4
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 2.7e-50 202.2 118 83.1
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.5e-48 196.4 136 65.4
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 9.8e-48 193.7 134 65.7
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.3e-47 193.4 129 65.9
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.7e-47 193.0 129 65.9
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.7e-47 193.0 132 65.2
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.8e-47 192.2 129 66.7
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 4.8e-47 191.4 128 68.0
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 8.3e-47 190.7 131 67.2
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 8.3e-47 190.7 132 62.1
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.1e-46 190.3 133 64.7
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 3.1e-46 188.7 131 67.2
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.1e-46 188.7 128 64.8
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 4.1e-46 188.3 128 64.1
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 7.0e-46 187.6 128 63.3
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 9.1e-46 187.2 128 66.4
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 9.1e-46 187.2 128 66.4
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 9.1e-46 187.2 134 64.2
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 9.1e-46 187.2 129 65.1
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.2e-45 186.8 129 64.3
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.2e-45 186.8 129 65.1
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.0e-45 186.0 130 62.3
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 4.5e-45 184.9 129 67.4
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 7.7e-45 184.1 131 60.3
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.3e-44 183.3 133 62.4
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.3e-44 183.3 129 58.9
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.7e-44 183.0 130 64.6
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 2.9e-44 182.2 129 62.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 2.9e-44 182.2 134 59.7
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 3.8e-44 181.8 133 62.4
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 3.8e-44 181.8 130 62.3
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 5.0e-44 181.4 132 61.4
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 5.0e-44 181.4 128 63.3
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 6.5e-44 181.0 128 62.5
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 6.5e-44 181.0 130 60.8
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 6.5e-44 181.0 133 62.4
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 6.5e-44 181.0 129 61.2
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 6.5e-44 181.0 128 64.1
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.1e-43 180.3 129 63.6
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.1e-43 180.3 129 63.6
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.5e-43 179.9 128 64.1
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.5e-43 179.9 129 62.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.9e-43 179.5 132 63.6
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.9e-43 179.5 130 63.8
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.9e-43 179.5 128 64.1
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.5e-43 179.1 130 61.5
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.5e-43 179.1 129 62.8
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 4.2e-43 178.3 134 58.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.2e-43 178.3 128 63.3
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 5.5e-43 177.9 132 62.1
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 7.2e-43 177.6 131 61.1
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.2e-43 177.6 130 60.0
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 9.5e-43 177.2 129 64.3
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.2e-42 176.8 134 61.9
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 1.2e-42 176.8 133 59.4
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 2.1e-42 176.0 135 62.2
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 2.1e-42 176.0 129 62.8
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 2.8e-42 175.6 128 60.2
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 3.6e-42 175.3 129 62.8
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 3.6e-42 175.3 144 58.3
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 4.7e-42 174.9 129 62.0
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 4.7e-42 174.9 132 61.4
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 6.1e-42 174.5 128 60.9
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.4e-41 173.3 132 60.6
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.8e-41 172.9 132 59.8
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 2.3e-41 172.6 129 58.9
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 3.0e-41 172.2 133 59.4
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 4.0e-41 171.8 133 58.6
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.2e-41 171.4 114 65.8
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 5.2e-41 171.4 136 55.9
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 1.2e-40 170.2 129 58.1
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 1.5e-40 169.9 130 56.9
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.0e-40 169.5 134 59.0
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 5.7e-40 167.9 134 58.2
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 5.7e-40 167.9 130 60.0
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 5.7e-40 167.9 130 60.0
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.3e-39 166.8 129 56.6
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 1.3e-39 166.8 133 54.1
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 6.3e-39 164.5 130 59.2
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 1.4e-38 163.3 135 57.0
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.4e-38 163.3 132 55.3
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.8e-38 162.9 128 58.6
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 7.0e-38 161.0 130 57.7
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.7e-37 159.1 132 55.3
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 4.5e-37 158.3 126 57.9
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 4.0e-33 145.2 133 51.9
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 6.8e-33 144.4 132 53.0
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.3e-28 129.4 131 45.0
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.0e-28 129.0 129 45.0
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.2e-26 123.6 136 42.6
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 8.0e-26 120.9 106 56.6
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.7e-21 105.9 155 35.5
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 3.3e-19 99.0 114 41.2
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.5e-16 90.1 50 78.0
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.4e-14 83.6 95 44.2
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 4.3e-11 72.0 133 37.6
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 9.5e-11 70.9 125 34.4
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 9.2e-06 54.3 121 30.6


User provided reference genes

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