Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.6e-65 252.7 132 100.0
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 7.4e-39 164.1 205 51.7
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 4.8e-38 161.4 218 49.5
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 4.8e-38 161.4 218 49.5
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 6.3e-38 161.0 204 50.5
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 6.9e-37 157.5 204 50.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 1.2e-36 156.8 206 49.5
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.2e-36 156.8 203 50.2
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 2.0e-36 156.0 205 49.3
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 3.4e-36 155.2 205 49.3
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 3.4e-36 155.2 205 49.3
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 3.4e-36 155.2 205 49.3
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.4e-36 155.2 205 49.3
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.0e-35 153.7 205 49.3
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.0e-35 153.7 205 49.3
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.0e-35 153.7 205 49.3
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.0e-35 153.7 205 49.3
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.0e-35 153.7 205 49.3
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.0e-35 153.7 205 48.3
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.7e-35 152.9 205 48.8
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.7e-35 152.9 205 48.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.9e-35 152.1 205 48.8
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.9e-35 152.1 205 48.8
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.9e-35 152.1 205 48.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 5.0e-35 151.4 219 46.6
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.5e-34 149.1 206 48.5
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.1e-33 146.0 209 45.5
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.7e-33 145.6 198 49.0
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 3.6e-33 145.2 219 45.7
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.3e-32 143.3 203 46.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.8e-32 142.9 205 47.3
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 6.7e-32 141.0 198 47.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.3e-30 136.7 205 45.4
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 6.3e-30 134.4 203 45.3
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-29 133.7 203 44.8
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.4e-29 133.3 203 44.8
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 2.4e-29 132.5 203 45.3
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 3.1e-29 132.1 203 44.3
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 3.1e-29 132.1 203 44.8
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.3e-29 131.3 203 44.3
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 6.9e-29 131.0 203 44.8
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.9e-29 131.0 203 44.3
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.2e-28 130.2 204 45.6
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.2e-28 130.2 204 45.6
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.2e-28 130.2 201 44.8
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 2.0e-28 129.4 212 43.4
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.0e-28 129.4 203 42.9
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 2.6e-28 129.0 203 43.8
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.4e-28 128.6 204 45.1
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 3.4e-28 128.6 203 42.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 3.4e-28 128.6 203 42.4
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 3.4e-28 128.6 203 43.3
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 4.5e-28 128.3 202 42.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 5.9e-28 127.9 206 43.7
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.0e-27 127.1 201 44.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 1.3e-27 126.7 203 44.3
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.3e-27 126.7 203 43.3
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.3e-27 126.7 205 42.9
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.3e-27 126.7 202 43.1
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.3e-27 126.7 203 43.3
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 2.2e-27 125.9 216 42.6
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.9e-27 125.6 208 41.8
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 2.9e-27 125.6 202 42.6
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 3.8e-27 125.2 209 43.1
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 5.0e-27 124.8 203 42.4
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 6.5e-27 124.4 202 42.6
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 8.5e-27 124.0 203 42.4
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 8.5e-27 124.0 202 42.1
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 8.5e-27 124.0 202 42.1
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 8.5e-27 124.0 203 42.9
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 8.5e-27 124.0 205 42.9
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.1e-26 123.6 210 42.9
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.1e-26 123.6 213 42.3
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 1.4e-26 123.2 203 42.9
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 1.9e-26 122.9 207 43.0
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.9e-26 122.9 209 41.6
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.9e-26 122.9 203 42.4
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 3.2e-26 122.1 203 41.4
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.2e-26 122.1 202 41.6
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.2e-26 121.7 212 42.0
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.5e-26 121.3 202 41.6
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 7.2e-26 120.9 207 42.0
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 7.2e-26 120.9 201 42.3
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 7.2e-26 120.9 222 40.5
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 7.2e-26 120.9 221 39.8
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 9.4e-26 120.6 209 42.6
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.2e-25 120.2 202 41.1
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 2.1e-25 119.4 218 40.4
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.1e-25 119.4 201 41.8
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.1e-25 119.4 212 41.5
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 2.1e-25 119.4 212 41.5
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.1e-25 119.4 212 41.5
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.7e-25 119.0 203 40.9
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.7e-25 119.0 212 41.5
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.6e-25 118.6 205 42.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 3.6e-25 118.6 211 39.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.7e-25 118.2 212 41.0
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 6.1e-25 117.9 192 41.7
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 7.9e-25 117.5 205 41.5
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 7.9e-25 117.5 203 41.9
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 7.9e-25 117.5 209 40.7
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.0e-24 117.1 210 41.0
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.8e-24 116.3 203 39.9
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.8e-24 116.3 212 40.1
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.8e-24 116.3 212 40.1
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.8e-24 116.3 212 40.1
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 2.3e-24 115.9 218 39.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 3.9e-24 115.2 227 38.3
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.9e-24 115.2 209 40.7
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.9e-24 115.2 209 40.7
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 3.9e-24 115.2 203 40.4
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 5.1e-24 114.8 209 40.7
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 6.7e-24 114.4 222 38.7
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 6.7e-24 114.4 207 41.1
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 6.7e-24 114.4 185 42.7
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.8e-24 114.0 209 40.2
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 8.8e-24 114.0 185 42.2
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 8.8e-24 114.0 209 40.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 8.8e-24 114.0 203 39.4
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.5e-23 113.2 185 42.2
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.0e-23 112.8 207 40.6
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 3.3e-23 112.1 185 42.2
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 5.7e-23 111.3 203 38.4
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 9.7e-23 110.5 203 39.9
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.8e-22 109.0 180 42.2
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 2.8e-22 109.0 185 40.5
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 4.8e-22 108.2 179 42.5
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.4e-21 106.7 180 41.1
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 2.4e-21 105.9 180 41.1
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 5.3e-21 104.8 169 44.4
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.2e-20 103.6 180 40.6
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.2e-20 103.6 69 76.8
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.4e-20 102.1 208 36.5
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.4e-18 96.7 164 42.7
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 2.5e-18 95.9 180 37.2
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.2e-17 93.6 241 32.8
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.2e-17 93.6 80 66.2
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.6e-17 93.2 69 69.6
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.7e-17 92.4 168 39.9
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 6.1e-17 91.3 209 36.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.2e-16 88.2 202 36.1
AL4G14590 Arabidopsis lyrata HOM05D004278 ORTHO05D079904 1.5e-15 86.7 60 78.3
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.6e-15 85.9 225 36.0
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 2.2e-14 82.8 51 78.4
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.8e-13 79.7 45 86.7
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.4e-13 79.3 167 34.7
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 3.1e-13 79.0 166 34.3
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.1e-13 78.6 182 34.1
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 5.3e-13 78.2 46 80.4
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 7.0e-13 77.8 41 92.7
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 7.0e-13 77.8 41 92.7
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.6e-12 76.6 41 90.2
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.5e-12 75.5 74 55.4
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 3.5e-12 75.5 41 87.8
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 3.5e-12 75.5 130 43.1
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 4.5e-12 75.1 41 87.8
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 5.9e-12 74.7 41 90.2
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 7.7e-12 74.3 169 33.7
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 6.5e-11 71.2 41 80.5
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.7e-09 65.9 40 77.5
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 4.7e-09 65.1 35 88.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.0e-08 62.4 41 73.2
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.0e-07 59.7 41 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.3e-06 57.0 58 51.7
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 4.8e-06 55.1 40 62.5


User provided reference genes

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