Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017837m.g Eutrema salsugineum HOM05D003941 ORTHO05D012174 0.0e+00 1464.1 719 100.0
Thhalv10017593m.g Eutrema salsugineum HOM05D003941 ORTHO05D012174 7.0e-224 781.2 726 57.4
Carub.0004s1585 Capsella rubella HOM05D003941 ORTHO05D012174 5.5e-213 745.0 720 56.4
AT2G34240 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 2.1e-212 743.0 705 56.5
CARHR128330 Cardamine hirsuta HOM05D003941 ORTHO05D012174 4.4e-210 735.3 727 55.0
BolC4t23064H Brassica oleracea HOM05D003941 ORTHO05D012174 3.7e-209 732.3 701 55.3
C04p14900 Brassica napus HOM05D003941 ORTHO05D012174 1.8e-208 729.9 697 55.5
AT2G34220 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 3.8e-206 722.2 726 54.1
CARHR128320 Cardamine hirsuta HOM05D003941 ORTHO05D012174 1.9e-205 719.9 724 53.7
AL4G30160 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 1.8e-200 703.4 724 54.0
BcaC02g11483 Brassica carinata HOM05D003941 ORTHO05D012174 2.1e-196 689.9 713 53.0
AL4G30170 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 1.2e-191 674.1 729 52.0
Carub.0004s1590 Capsella rubella HOM05D003941 ORTHO05D012174 3.7e-177 625.9 700 50.0
AT2G34230 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 4.3e-173 612.5 654 52.0
A05p11410 Brassica napus HOM05D003941 ORTHO05D012174 3.1e-163 579.7 570 54.2
Carub.0004s1588 Capsella rubella HOM05D003941 ORTHO05D012174 2.2e-161 573.5 702 46.3
AL4G30150 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 1.9e-152 543.9 718 45.0
BraA05t20090Z Brassica rapa HOM05D003941 ORTHO05D012174 3.2e-152 543.1 570 51.9
Carub.0004s1586 Capsella rubella HOM05D003941 ORTHO05D012174 3.9e-150 536.2 727 44.6
BcaB02g09553 Brassica carinata HOM05D003941 ORTHO05D012174 2.4e-144 516.9 436 57.8
BcaC02g11482 Brassica carinata HOM05D003941 ORTHO05D012174 1.1e-123 448.4 400 56.5
THA.LOC104821900 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 1.8e-99 367.9 729 33.3
THA.LOC104805708 Tarenaya hassleriana HOM05D003941 ORTHO05D002286 5.4e-91 339.7 743 31.2
THA.LOC104821885 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 2.4e-83 314.3 723 30.3
AL2G19970 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 8.6e-81 305.8 712 31.5
Carub.0002s1060 Capsella rubella HOM05D003941 ORTHO05D009447 8.9e-78 295.8 712 31.7
AL2G19870 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 1.2e-77 295.4 707 30.6
AT1G65130 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.2e-76 291.2 685 30.7
CARHR056610 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.6e-74 285.0 676 30.6
Thhalv10019959m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 1.6e-74 285.0 726 28.8
CARHR038560 Cardamine hirsuta HOM05D003941 ORTHO05D009447 7.8e-74 282.7 700 29.4
AT1G52430 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 1.0e-73 282.3 738 31.3
AT1G65120 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.3e-73 281.2 751 29.7
AL2G19840 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 3.9e-73 280.4 698 30.2
AL8G38700 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 2.5e-72 277.7 704 30.8
AT5G61940 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 4.3e-72 276.9 713 30.7
Carub.0001s4142 Capsella rubella HOM05D003941 ORTHO05D009447 5.6e-72 276.6 749 29.8
BcaC05g29948 Brassica carinata HOM05D003941 ORTHO05D009447 2.1e-71 274.6 725 30.8
BolC5t34939H Brassica oleracea HOM05D003941 ORTHO05D009447 2.1e-71 274.6 709 31.0
CARHR275730 Cardamine hirsuta HOM05D003941 ORTHO05D009447 2.1e-71 274.6 696 30.5
AL2G20130 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 6.2e-71 273.1 728 30.8
AT1G52450 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 8.0e-71 272.7 736 30.0
Carub.0008s2263 Capsella rubella HOM05D003941 ORTHO05D009447 1.0e-70 272.3 713 29.3
CARHR056630 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.4e-70 271.9 716 29.7
BraA05t23053Z Brassica rapa HOM05D003941 ORTHO05D009447 6.8e-70 269.6 686 31.2
Sp3g03240 Schrenkiella parvula HOM05D003941 ORTHO05D009447 6.8e-70 269.6 732 28.8
C05p62840 Brassica napus HOM05D003941 ORTHO05D009447 1.2e-69 268.9 688 31.1
Carub.0002s1057 Capsella rubella HOM05D003941 ORTHO05D009447 1.2e-69 268.9 659 28.7
AT1G65110 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.6e-69 267.7 699 29.9
A05p43100 Brassica napus HOM05D003941 ORTHO05D009447 3.4e-69 267.3 723 30.2
Carub.0002s1061 Capsella rubella HOM05D003941 ORTHO05D009447 5.8e-69 266.5 659 30.7
Carub.0004s0831 Capsella rubella HOM05D003941 ORTHO05D009447 5.8e-69 266.5 718 30.4
CARHR056760 Cardamine hirsuta HOM05D003941 ORTHO05D009447 9.8e-69 265.8 703 30.6
BcaC05g30233 Brassica carinata HOM05D003941 ORTHO05D009447 1.3e-68 265.4 675 29.9
BcaC05g30202 Brassica carinata HOM05D003941 ORTHO05D009447 1.7e-68 265.0 701 29.4
AT5G51530 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.2e-68 264.6 680 29.6
AT5G61950 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 8.3e-68 262.7 705 30.2
Carub.0002s1065 Capsella rubella HOM05D003941 ORTHO05D009447 1.1e-67 262.3 713 29.9
AL2G20180 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 1.4e-67 261.9 656 30.8
CARHR120250 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.4e-67 261.9 717 29.0
AT1G65200 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 3.2e-67 260.8 716 29.1
Thhalv10005598m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 9.2e-67 259.2 705 29.2
CARHR275710 Cardamine hirsuta HOM05D003941 ORTHO05D009447 2.7e-66 257.7 733 29.2
Thhalv10005669m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 2.7e-66 257.7 721 28.4
AL4G22760 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 6.0e-66 256.5 693 30.0
BcaC03g14681 Brassica carinata HOM05D003941 ORTHO05D009447 1.0e-65 255.8 724 30.0
Carub.0004s0829 Capsella rubella HOM05D003941 ORTHO05D009447 1.0e-65 255.8 730 29.2
Carub.0008s2262 Capsella rubella HOM05D003941 ORTHO05D009447 1.0e-65 255.8 689 30.0
Aa31LG2G2340 Aethionema arabicum HOM05D003941 ORTHO05D009447 1.7e-65 255.0 695 27.8
C02p21210 Brassica napus HOM05D003941 ORTHO05D009447 6.6e-65 253.1 733 29.9
A05p43090 Brassica napus HOM05D003941 ORTHO05D009447 8.6e-65 252.7 686 30.6
BolC2t08261H Brassica oleracea HOM05D003941 ORTHO05D009447 8.6e-65 252.7 730 29.7
AL8G38710 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 1.1e-64 252.3 704 30.1
BraA02t06363Z Brassica rapa HOM05D003941 ORTHO05D009447 1.1e-64 252.3 684 29.8
SpUn0054_0050 Schrenkiella parvula HOM05D003941 ORTHO05D009447 1.5e-64 251.9 710 27.7
Thhalv10005405m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 1.9e-64 251.5 708 29.1
AT2G27650 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.5e-64 251.1 702 28.8
THA.LOC104821865 Tarenaya hassleriana HOM05D003941 ORTHO05D009447 4.3e-64 250.4 683 29.9
A02p13070 Brassica napus HOM05D003941 ORTHO05D009447 7.3e-64 249.6 707 29.0
AT2G27630 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.8e-63 247.7 693 28.4
Aa31LG2G2310 Aethionema arabicum HOM05D003941 ORTHO05D009447 3.1e-62 244.2 690 28.3
BolC2t08263H Brassica oleracea HOM05D003941 ORTHO05D009447 3.1e-62 244.2 713 29.5
Carub.0002s1066 Capsella rubella HOM05D003941 ORTHO05D009447 6.8e-62 243.0 714 28.2
BraA02t06365Z Brassica rapa HOM05D003941 ORTHO05D009447 1.2e-61 242.3 713 29.3
A02p13090 Brassica napus HOM05D003941 ORTHO05D009447 1.5e-61 241.9 713 29.2
BcaC03g14683 Brassica carinata HOM05D003941 ORTHO05D009447 4.4e-61 240.4 711 29.1
BcaB05g24095 Brassica carinata HOM05D003941 ORTHO05D009447 1.7e-60 238.4 733 29.2
Sp2g25130 Schrenkiella parvula HOM05D003941 ORTHO05D009447 2.2e-60 238.0 716 28.8
CARHR275720 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.7e-60 237.3 705 28.8
Carub.0008s2264 Capsella rubella HOM05D003941 ORTHO05D009447 6.4e-60 236.5 722 28.5
THA.LOC104825520 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 6.4e-60 236.5 683 27.2
C02p21230 Brassica napus HOM05D003941 ORTHO05D009447 1.2e-58 232.3 738 28.3
CARHR056640 Cardamine hirsuta HOM05D003941 ORTHO05D009447 6.0e-58 229.9 518 30.9
BolC2t12229H Brassica oleracea HOM05D003941 ORTHO05D009447 3.9e-57 227.3 731 28.7
BcaC05g30201 Brassica carinata HOM05D003941 ORTHO05D009447 2.5e-56 224.6 534 32.0
BcaC03g18108 Brassica carinata HOM05D003941 ORTHO05D009447 1.4e-54 218.8 541 29.9
CARHR120240 Cardamine hirsuta HOM05D003941 ORTHO05D009447 2.3e-54 218.0 694 26.9
BraA02t09120Z Brassica rapa HOM05D003941 ORTHO05D009447 4.0e-54 217.2 737 28.6
BcaC03g18107 Brassica carinata HOM05D003941 ORTHO05D009447 5.2e-54 216.9 709 27.2
BcaB05g24093 Brassica carinata HOM05D003941 ORTHO05D009447 2.6e-53 214.5 701 28.7
BcaC03g18102 Brassica carinata HOM05D003941 ORTHO05D009447 8.4e-52 209.5 734 27.4
Carub.0006s0157 Capsella rubella HOM05D003941 ORTHO05D009447 3.2e-51 207.6 707 26.9
BolC2t12225H Brassica oleracea HOM05D003941 ORTHO05D009447 5.4e-51 206.8 734 27.2
C02p61750 Brassica napus HOM05D003941 ORTHO05D009447 2.1e-50 204.9 627 29.0
C02p61760 Brassica napus HOM05D003941 ORTHO05D009447 3.5e-50 204.1 530 28.9
A02p41830 Brassica napus HOM05D003941 ORTHO05D009447 8.6e-49 199.5 530 28.7
BraA02t09115Z Brassica rapa HOM05D003941 ORTHO05D009447 1.5e-48 198.7 734 27.0
A02p41750 Brassica napus HOM05D003941 ORTHO05D009447 2.5e-48 198.0 718 27.3
C02p61670 Brassica napus HOM05D003941 ORTHO05D009447 1.2e-47 195.7 721 27.0
A02p41820 Brassica napus HOM05D003941 ORTHO05D009447 1.6e-47 195.3 459 31.4
Thhalv10015405m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 1.4e-43 182.2 652 26.1
BcaB07g29810 Brassica carinata HOM05D003941 ORTHO05D009447 3.5e-42 177.6 514 28.8
BcaB07g29812 Brassica carinata HOM05D003941 ORTHO05D009447 1.7e-41 175.3 583 26.1
BcaNung07176 Brassica carinata HOM05D003941 ORTHO05D009447 4.3e-40 170.6 402 30.3
AT5G02660 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 7.6e-37 159.8 654 24.8
CARHR038520 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.1e-30 137.9 368 28.5
CARHR156620 Cardamine hirsuta HOM05D001961 ORTHO05D002286 2.3e-17 95.1 576 17.4
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 8.7e-17 93.2 630 19.5
Carub.0005s1403 Capsella rubella HOM05D001961 ORTHO05D002286 3.3e-16 91.3 489 20.7
Phvul.003G194200 Phaseolus vulgaris HOM05D001961 ORTHO05D002286 9.6e-16 89.7 625 20.3
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 2.8e-15 88.2 601 19.8
Actinidia36031 Actinidia chinensis HOM05D001961 ORTHO05D002286 4.8e-15 87.4 590 19.8
Sed0025522 Sechium edule HOM05D001961 ORTHO05D002286 4.8e-15 87.4 450 21.6
Cfa021166 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.4e-14 85.9 702 20.8
HanXRQChr08g0236941 Helianthus annuus HOM05D001961 ORTHO05D002286 1.8e-14 85.5 596 20.5
Cfa009758 Carpinus fangiana HOM05D001961 ORTHO05D002286 4.1e-14 84.3 702 20.8
CSS0004686 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 5.3e-14 84.0 508 22.4
VMungo1215G0372 Vigna mungo HOM05D001961 ORTHO05D002286 9.0e-14 83.2 627 19.3
Glyma.17G095800 Glycine max HOM05D001961 ORTHO05D002286 1.5e-13 82.4 595 18.8
Glyma.05G031000 Glycine max HOM05D001961 ORTHO05D002286 5.9e-13 80.5 596 20.6
Rhsim10G0031400 Rhododendron simsii HOM05D001961 ORTHO05D002286 3.8e-12 77.8 595 20.7
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 6.5e-12 77.0 417 20.9
Rhsim10G0032100 Rhododendron simsii HOM05D001961 ORTHO05D002286 8.5e-12 76.6 595 21.0
Aqoxy4G02900 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.9e-11 75.5 627 21.1
Aqoxy4G02940 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 2.5e-11 75.1 575 20.9
Dinv33704 Davidia involucrata HOM05D001961 ORTHO05D002286 3.2e-11 74.7 497 21.5
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 7.2e-11 73.6 420 21.2
SEGI_13866 Sequoiadendron giganteum HOM05D001961 ORTHO05D002286 1.6e-10 72.4 406 20.7
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 7.9e-10 70.1 413 22.3
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.0e-09 69.7 416 21.4
Nitab4.5_0004478g0040 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.9e-08 65.5 638 19.1
Lj9C457G12 Lonicera japonica HOM05D001961 ORTHO05D002286 2.5e-08 65.1 582 18.2
Sp6g11660 Schrenkiella parvula HOM05D003941 ORTHO05D009447 2.5e-08 65.1 99 34.3
GSVIVG01032595001 Vitis vinifera HOM05D001961 ORTHO05D002286 5.7e-08 63.9 251 25.1
Zm00001eb005070 Zea mays HOM05D001961 ORTHO05D002286 5.7e-08 63.9 599 18.9
Pp3c16_3030 Physcomitrium patens HOM05D001961 ORTHO05D002286 2.2e-07 62.0 423 22.0
Nitab4.5_0007282g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.4e-06 59.3 296 21.6


User provided reference genes

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