Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 2.9e-79 298.5 155 100.0
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.7e-48 195.7 106 95.3
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.5e-48 195.3 106 95.3
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.1e-46 190.3 106 92.5
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-46 190.3 106 92.5
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.1e-46 190.3 106 92.5
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.1e-46 190.3 106 92.5
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.5e-46 189.9 106 93.4
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.5e-46 189.9 106 93.4
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 3.3e-46 188.7 106 91.5
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 4.3e-46 188.3 106 92.5
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 5.6e-46 188.0 106 92.5
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 1.6e-45 186.4 106 89.6
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.6e-45 186.4 106 91.5
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 5.3e-44 181.4 106 88.7
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.2e-43 180.3 106 83.0
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 7.6e-43 177.6 99 91.9
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 7.6e-43 177.6 107 90.7
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 2.2e-42 176.0 106 89.6
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.9e-42 175.6 106 82.1
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 6.4e-42 174.5 107 85.0
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.9e-41 172.9 107 84.1
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 7.1e-41 171.0 104 87.5
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.2e-40 170.2 107 87.9
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 2.1e-40 169.5 107 86.9
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.0e-39 165.6 107 80.4
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.6e-32 143.3 106 66.0
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 4.6e-32 141.7 106 67.9
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.3e-31 140.2 106 65.1
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.3e-31 140.2 106 65.1
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.3e-31 140.2 106 65.1
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.8e-31 139.8 106 65.1
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.3e-31 139.4 106 65.1
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.3e-31 139.4 106 65.1
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 3.0e-31 139.0 107 64.5
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 3.9e-31 138.7 105 63.8
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.9e-31 138.7 105 63.8
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 5.1e-31 138.3 103 68.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 5.1e-31 138.3 103 68.0
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 8.7e-31 137.5 105 62.9
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.9e-30 136.3 106 66.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.9e-30 136.3 105 63.8
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 1.9e-30 136.3 111 62.2
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 2.5e-30 136.0 106 67.9
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.3e-30 135.6 106 64.2
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.3e-30 135.6 105 62.9
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 4.3e-30 135.2 109 62.4
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 4.3e-30 135.2 109 62.4
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 4.3e-30 135.2 103 65.0
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 4.3e-30 135.2 106 64.2
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 5.6e-30 134.8 105 61.9
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 7.4e-30 134.4 103 64.1
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 9.6e-30 134.0 105 63.8
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 9.6e-30 134.0 105 63.8
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 9.6e-30 134.0 88 73.9
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 2.8e-29 132.5 106 61.3
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 3.7e-29 132.1 109 61.5
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.7e-29 132.1 103 63.1
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 4.8e-29 131.7 106 62.3
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 8.1e-29 131.0 105 61.9
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 8.1e-29 131.0 103 63.1
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 8.1e-29 131.0 106 64.2
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.1e-28 130.6 105 60.0
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.4e-28 130.2 90 68.9
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.4e-28 130.2 106 61.3
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 2.4e-28 129.4 108 58.3
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.4e-28 129.4 103 60.2
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.4e-28 129.4 106 62.3
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 3.1e-28 129.0 109 61.5
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.0e-28 128.6 88 70.5
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 4.0e-28 128.6 92 68.5
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 5.3e-28 128.3 105 59.0
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 5.3e-28 128.3 106 58.5
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 5.3e-28 128.3 107 60.7
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 6.9e-28 127.9 105 61.9
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 6.9e-28 127.9 114 54.4
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 9.0e-28 127.5 103 62.1
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 2.0e-27 126.3 119 57.1
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.0e-27 126.3 93 65.6
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.6e-27 125.9 107 61.7
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 4.5e-27 125.2 105 59.0
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 4.5e-27 125.2 105 61.9
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 4.5e-27 125.2 103 64.1
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.5e-27 125.2 106 62.3
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.8e-27 124.8 89 64.0
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.8e-27 124.8 100 59.0
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 5.8e-27 124.8 105 58.1
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 5.8e-27 124.8 105 57.1
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 5.8e-27 124.8 141 47.5
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 7.6e-27 124.4 105 58.1
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 7.6e-27 124.4 103 61.2
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 7.6e-27 124.4 107 61.7
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.0e-26 124.0 89 65.2
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 1.0e-26 124.0 98 66.3
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.3e-26 123.6 88 68.2
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 2.2e-26 122.9 89 65.2
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.2e-26 122.9 90 65.6
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 4.9e-26 121.7 100 60.0
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 4.9e-26 121.7 95 62.1
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 8.4e-26 120.9 94 63.8
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-25 120.6 98 61.2
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.9e-25 119.8 108 62.0
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 2.5e-25 119.4 91 64.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 2.5e-25 119.4 89 62.9
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.2e-24 117.1 126 50.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.1e-24 116.3 106 56.6
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.7e-24 115.9 90 63.3
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.0e-23 114.0 103 56.3
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.0e-23 114.0 84 65.5
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.3e-23 113.6 105 59.0
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 3.0e-23 112.5 127 48.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.9e-23 112.1 146 49.3
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 5.1e-23 111.7 101 60.4
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 6.7e-23 111.3 89 58.4
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 8.7e-23 110.9 75 68.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.5e-22 110.2 106 53.8
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.5e-22 110.2 91 61.5
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.9e-22 109.8 107 61.7
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.3e-22 108.6 107 60.7
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.3e-21 107.1 88 62.5
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.1e-21 106.3 93 60.2
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 3.7e-21 105.5 106 54.7
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 6.2e-21 104.8 90 58.9
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.4e-20 103.6 89 62.9
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.8e-20 103.2 84 60.7
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 2.4e-20 102.8 107 52.3
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 5.3e-20 101.7 90 57.8
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.4e-17 93.6 74 60.8
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 3.2e-17 92.4 99 48.5
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.6e-16 90.1 99 49.5
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 4.6e-16 88.6 74 63.5
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.3e-15 87.0 103 49.5
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 6.7e-15 84.7 73 57.5
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 7.4e-14 81.3 84 52.4
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.3e-13 80.5 55 67.3
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 3.7e-13 79.0 74 56.8
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 6.3e-13 78.2 88 52.3
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.4e-12 77.0 59 64.4
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.4e-12 76.3 55 63.6
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.7e-11 71.2 69 56.5
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.3e-10 70.5 61 54.1
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.8e-10 68.9 51 64.7
Sp1g13000 Schrenkiella parvula HOM05D005271 ORTHO05D006072 8.5e-10 67.8 34 97.1
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.2e-09 65.5 57 57.9
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.2e-09 64.7 50 66.0
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 4.6e-08 62.0 69 47.8
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 3.3e-06 55.8 72 44.4


User provided reference genes

Program Settings