Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017752m.g Eutrema salsugineum HOM05D000370 ORTHO05D001366 3.2e-41 171.4 92 100.0
Sp4g21940 Schrenkiella parvula HOM05D000370 ORTHO05D001366 1.6e-35 152.5 92 87.0
BraA04t18472Z Brassica rapa HOM05D000370 ORTHO05D001366 1.7e-34 149.1 92 83.7
BolC4t28244H Brassica oleracea HOM05D000370 ORTHO05D001366 2.9e-34 148.3 92 84.8
A04p30360 Brassica napus HOM05D000370 ORTHO05D001366 5.0e-34 147.5 92 83.7
C04p67470 Brassica napus HOM05D000370 ORTHO05D001366 5.0e-34 147.5 92 83.7
Carub.0004s2173 Capsella rubella HOM05D000370 ORTHO05D001366 2.5e-33 145.2 92 79.3
AT3G47675 Arabidopsis thaliana HOM05D000370 ORTHO05D001366 2.7e-32 141.7 89 83.1
BcaC02g07423 Brassica carinata HOM05D000370 ORTHO05D001366 3.0e-31 138.3 85 84.7
BcaB06g29112 Brassica carinata HOM05D000370 ORTHO05D001366 2.8e-29 131.7 92 78.3
CARHR134520 Cardamine hirsuta HOM05D000370 ORTHO05D001366 7.2e-25 117.1 67 91.0
AT2G39690 Arabidopsis thaliana HOM05D000370 ORTHO05D001366 1.4e-23 112.8 67 86.6
Aa31LG5G19970 Aethionema arabicum HOM05D000370 ORTHO05D001366 3.2e-17 91.7 73 64.4
THA.LOC104824281 Tarenaya hassleriana HOM05D000370 ORTHO05D001366 4.0e-15 84.7 91 52.7
CiPaw.01G288300 Carya illinoinensis HOM05D000370 ORTHO05D001366 1.5e-14 82.8 92 55.4
TAR623G1607 Trochodendron aralioides HOM05D000370 ORTHO05D001366 2.2e-13 79.0 92 51.1
PGR142G3544 Punica granatum HOM05D000370 ORTHO05D001366 3.7e-13 78.2 92 51.1
VMungo0647G2191 Vigna mungo HOM05D000370 ORTHO05D001366 3.7e-13 78.2 92 52.2
arahy.Tifrunner.gnm1.ann1.KE1X4X Arachis hypogaea HOM05D000370 ORTHO05D001366 6.3e-13 77.4 92 48.9
arahy.Tifrunner.gnm1.ann1.RJ2ENL Arachis hypogaea HOM05D000370 ORTHO05D001366 6.3e-13 77.4 92 48.9
LjContig00141g0011124 Lotus japonicus HOM05D000370 ORTHO05D001366 6.3e-13 77.4 92 51.1
Glyma.14G068300 Glycine max HOM05D000370 ORTHO05D001366 1.8e-12 75.9 92 47.8
QL08p059637 Quercus lobata HOM05D000370 ORTHO05D001366 1.8e-12 75.9 91 51.6
Thecc.10G040500 Theobroma cacao HOM05D000370 ORTHO05D001366 9.2e-12 73.6 92 48.9
AT3G12540 Arabidopsis thaliana HOM05D000370 ORTHO05D001366 2.7e-11 72.0 75 49.3
Carub.0003s1187 Capsella rubella HOM05D000370 ORTHO05D001366 2.7e-11 72.0 75 49.3
MD01G1135300 Malus domestica HOM05D000370 ORTHO05D001366 2.7e-11 72.0 92 50.0
Duzib114G1038 Durio zibethinus HOM05D000370 ORTHO05D001366 3.5e-11 71.6 92 47.8
Prupe.2G236600 Prunus persica HOM05D000370 ORTHO05D001366 3.5e-11 71.6 92 48.9
CARHR087040 Cardamine hirsuta HOM05D000370 ORTHO05D001366 7.8e-11 70.5 71 50.7
Thhalv10020556m.g Eutrema salsugineum HOM05D000370 ORTHO05D001366 7.8e-11 70.5 66 54.5
Sp3g10680 Schrenkiella parvula HOM05D000370 ORTHO05D001366 7.8e-11 70.5 75 48.0
AL3G24170 Arabidopsis lyrata HOM05D000370 ORTHO05D001366 1.0e-10 70.1 66 54.5
THA.LOC104799340 Tarenaya hassleriana HOM05D000370 ORTHO05D001366 1.0e-10 70.1 71 53.5
CANSAT56G2573 Cannabis sativa HOM05D000370 ORTHO05D001366 1.3e-10 69.7 92 43.5
Potri.010G202900 Populus trichocarpa HOM05D000370 ORTHO05D001366 1.3e-10 69.7 91 47.3
FAN01G0125 Fragaria x ananassa HOM05D000370 ORTHO05D001366 1.7e-10 69.3 91 49.5
Medtr5g079910 Medicago truncatula HOM05D000370 ORTHO05D001366 1.7e-10 69.3 93 48.4
RhsimUnG0041900 Rhododendron simsii HOM05D000370 ORTHO05D001366 1.7e-10 69.3 91 46.2
RcHm_v2.0_Chr1g0367751 Rosa chinensis HOM05D000370 ORTHO05D001366 2.3e-10 68.9 91 49.5
FvH4_7g22670 Fragaria vesca HOM05D000370 ORTHO05D001366 2.9e-10 68.6 91 49.5
FAN01G1643 Fragaria x ananassa HOM05D000370 ORTHO05D001366 2.9e-10 68.6 91 49.5
FAN03G1955 Fragaria x ananassa HOM05D000370 ORTHO05D001366 2.9e-10 68.6 91 49.5
FAN06G0629 Fragaria x ananassa HOM05D000370 ORTHO05D001366 2.9e-10 68.6 91 49.5
FAN06G4619 Fragaria x ananassa HOM05D000370 ORTHO05D001366 2.9e-10 68.6 91 49.5
FAN10G0290 Fragaria x ananassa HOM05D000370 ORTHO05D001366 2.9e-10 68.6 91 49.5
Phvul.008G232500 Phaseolus vulgaris HOM05D000370 ORTHO05D001366 3.8e-10 68.2 91 47.3
Aa31LG3G110 Aethionema arabicum HOM05D000370 ORTHO05D001366 6.6e-10 67.4 75 48.0
Lalb_Chr04g0251211 Lupinus albus HOM05D000370 ORTHO05D001366 6.6e-10 67.4 90 45.6
Psat2g041320 Pisum sativum HOM05D000370 ORTHO05D001366 1.5e-09 66.2 93 47.3
Ciclev10033326m.g Citrus clementina HOM05D000370 ORTHO05D001366 2.5e-09 65.5 90 44.4
FAN03G1228 Fragaria x ananassa HOM05D000370 ORTHO05D001366 2.5e-09 65.5 91 48.4
Nn2g11125 Nelumbo nucifera HOM05D000370 ORTHO05D001366 2.5e-09 65.5 90 46.7
Haze_17076 Corylus avellana HOM05D000370 ORTHO05D001366 4.3e-09 64.7 103 45.6
Dinv26025 Davidia involucrata HOM05D000370 ORTHO05D001366 5.6e-09 64.3 92 45.7
Dinv03040 Davidia involucrata HOM05D000370 ORTHO05D001366 9.5e-09 63.5 91 47.3
MD07G1200000 Malus domestica HOM05D000370 ORTHO05D001366 1.2e-08 63.2 92 47.8
Aqoxy4G02885 Aquilegia oxysepala HOM05D000370 ORTHO05D001366 2.1e-08 62.4 91 40.7
TWI38G0993 Tripterygium wilfordii HOM05D000370 ORTHO05D001366 2.1e-08 62.4 98 43.9
Gohir.A06G167200 Gossypium hirsutum HOM05D000370 ORTHO05D001366 2.8e-08 62.0 95 41.1
BcaB06g25533 Brassica carinata HOM05D000370 ORTHO05D001366 3.6e-08 61.6 80 43.8
A03p37680 Brassica napus HOM05D000370 ORTHO05D001366 3.6e-08 61.6 83 43.4
BraA03t12921Z Brassica rapa HOM05D000370 ORTHO05D001366 3.6e-08 61.6 83 43.4
BraA05t22493Z Brassica rapa HOM05D000370 ORTHO05D001366 3.6e-08 61.6 70 45.7
A05p36940 Brassica napus HOM05D000370 ORTHO05D001366 4.7e-08 61.2 70 44.3
BolC3t16846H Brassica oleracea HOM05D000370 ORTHO05D001366 4.7e-08 61.2 87 41.4
Cc02_g07740 Coffea canephora HOM05D000370 ORTHO05D001366 4.7e-08 61.2 91 44.0
Manes.07G117000 Manihot esculenta HOM05D000370 ORTHO05D001366 4.7e-08 61.2 99 42.4
Cfa001466 Carpinus fangiana HOM05D000370 ORTHO05D001366 6.1e-08 60.8 75 49.3
Ca_05891_v3 Cicer arietinum L. HOM05D000370 ORTHO05D001366 6.1e-08 60.8 93 44.1
C03p45730 Brassica napus HOM05D000370 ORTHO05D001366 8.0e-08 60.5 83 42.2
BolC5t34205H Brassica oleracea HOM05D000370 ORTHO05D001366 1.0e-07 60.1 70 44.3
Ah.10g037210 Amaranthus hybridus HOM05D000370 ORTHO05D001366 1.4e-07 59.7 90 43.3
BcaC05g29259 Brassica carinata HOM05D000370 ORTHO05D001366 1.4e-07 59.7 70 44.3
DCAR_011711 Daucus carota HOM05D000370 ORTHO05D001366 3.0e-07 58.5 91 42.9
Gohir.D06G172600 Gossypium hirsutum HOM05D000370 ORTHO05D001366 3.0e-07 58.5 95 40.0
Gorai.010G201500 Gossypium raimondii HOM05D000370 ORTHO05D001366 3.0e-07 58.5 95 40.0
C05p55390 Brassica napus HOM05D000370 ORTHO05D001366 5.2e-07 57.8 70 42.9
COL.COLO4_15057 Corchorus olitorius HOM05D001158 ORTHO05D000964 6.8e-07 57.4 68 47.1
SalBow6G2342 Salvia bowleyana HOM05D000370 ORTHO05D001366 1.5e-06 56.2 93 41.9
TPR.G3504 Trifolium pratense HOM05D000370 ORTHO05D001366 1.5e-06 56.2 94 43.6
Sed0022767 Sechium edule HOM05D000370 ORTHO05D001366 2.6e-06 55.5 84 45.2
HPP92_003395 Vanilla planifolia HOM05D000370 ORTHO05D001366 4.4e-06 54.7 92 40.2
Atru.chr12.435 Acer truncatum HOM05D000370 ORTHO05D001366 7.5e-06 53.9 73 45.2


User provided reference genes

Program Settings