Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.9e-239 832.0 397 100.0
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.1e-202 709.9 396 86.4
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 3.2e-202 708.4 393 87.0
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 3.2e-202 708.4 393 87.0
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.1e-201 705.7 397 86.9
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 2.7e-201 705.3 397 86.4
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 6.0e-201 704.1 397 85.4
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.3e-199 698.0 393 86.5
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.1e-198 695.7 397 84.4
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 4.9e-195 684.5 447 76.5
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.0e-192 676.8 397 83.4
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.9e-192 674.9 393 83.5
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.8e-174 615.5 398 77.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.4e-173 613.2 400 76.0
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.8e-160 569.7 393 74.3
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.5e-156 555.1 345 78.8
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.5e-154 549.3 403 68.7
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.2e-153 547.0 401 68.3
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 7.9e-153 544.3 403 68.5
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.9e-152 542.0 396 68.4
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 9.7e-151 537.3 408 67.6
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.1e-149 533.9 404 66.3
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.4e-149 532.7 405 66.7
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 3.4e-148 528.9 415 65.5
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.0e-147 527.3 413 67.8
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.9e-147 525.8 403 67.0
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 3.8e-147 525.4 412 65.0
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 3.2e-146 522.3 408 65.9
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 9.4e-146 520.8 409 66.7
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.6e-145 520.0 401 65.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.6e-145 520.0 404 67.6
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.7e-145 519.2 399 66.7
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.6e-145 518.5 411 65.0
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 4.6e-145 518.5 399 65.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 6.1e-145 518.1 410 67.1
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.4e-144 516.9 403 67.0
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 2.3e-144 516.2 407 66.3
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 3.0e-144 515.8 397 68.0
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.0e-144 515.8 406 64.8
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.9e-144 515.4 408 65.4
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 3.9e-144 515.4 401 66.6
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 6.7e-144 514.6 408 65.9
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 6.7e-144 514.6 397 66.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 8.8e-144 514.2 403 67.0
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 4.3e-143 511.9 408 64.7
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 5.7e-143 511.5 416 64.9
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 9.7e-143 510.8 405 65.4
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.7e-142 510.0 405 65.2
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.1e-141 507.3 402 65.9
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.4e-141 506.9 393 65.6
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.8e-141 506.5 393 65.4
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.4e-141 506.1 402 66.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 3.1e-141 505.8 415 63.6
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.6e-140 502.7 401 65.8
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 3.4e-140 502.3 403 65.3
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 4.5e-140 501.9 401 65.1
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 5.9e-140 501.5 394 64.7
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.3e-139 500.4 411 64.0
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.9e-139 499.2 403 65.3
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 3.8e-139 498.8 402 64.7
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 5.0e-139 498.4 400 65.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.6e-137 493.4 445 61.1
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 3.6e-137 492.3 407 61.7
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.0e-136 490.7 406 63.1
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 5.1e-136 488.4 391 65.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 6.7e-136 488.0 289 81.0
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 3.3e-135 485.7 378 65.6
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.3e-134 483.8 434 61.1
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 1.3e-134 483.8 403 63.0
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.7e-134 483.4 409 63.8
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.8e-134 482.6 396 63.9
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.8e-133 479.9 391 62.4
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 1.5e-132 476.9 411 61.8
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 2.0e-132 476.5 420 59.5
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 2.0e-132 476.5 401 62.3
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.5e-132 475.7 398 63.3
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 3.5e-132 475.7 280 81.4
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 5.9e-132 474.9 413 60.0
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 8.5e-131 471.1 394 61.7
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 7.2e-130 468.0 394 62.9
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 3.6e-129 465.7 415 61.4
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 3.9e-128 462.2 430 59.1
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 5.2e-128 461.8 394 61.7
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 6.7e-128 461.5 413 59.3
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.7e-126 456.8 361 64.8
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.9e-123 446.0 330 68.8
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 3.6e-121 439.1 419 57.3
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 8.0e-121 438.0 385 60.3
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.4e-120 437.2 304 69.4
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 3.4e-119 432.6 386 60.1
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.5e-119 431.4 399 57.6
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 8.3e-118 427.9 287 71.8
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.1e-117 427.6 414 56.8
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 5.3e-117 425.2 269 77.0
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.2e-115 419.9 399 56.6
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.4e-112 410.6 280 70.4
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.8e-112 410.2 394 55.6
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 9.8e-111 404.4 377 57.8
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.3e-107 393.3 412 54.6
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 5.5e-106 388.7 325 64.3
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 5.5e-106 388.7 299 63.2
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 2.3e-104 383.3 413 52.1
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.8e-101 373.6 277 66.8
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.7e-99 367.1 402 53.0
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 5.6e-98 362.1 823 32.9
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.7e-97 359.0 420 50.7
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 4.0e-96 355.9 299 63.2
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 2.9e-94 349.7 398 50.3
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.1e-93 347.8 392 51.0
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 1.8e-88 330.5 233 66.5
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.4e-87 326.2 194 79.9
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-85 319.3 286 55.9
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 6.6e-83 312.0 401 46.1
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 3.1e-72 276.6 296 47.6
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 3.4e-71 273.1 259 58.3
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 7.1e-69 265.4 271 49.1
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.1e-64 251.5 263 54.8
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 2.2e-62 243.8 299 43.1
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 2.5e-58 230.3 132 81.1
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.1e-56 224.9 312 40.7
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 5.3e-56 222.6 125 81.6
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 5.3e-56 222.6 399 38.3
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 7.6e-55 218.8 356 43.0
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.3e-51 208.0 290 39.0
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.1e-48 198.4 109 88.1
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 4.5e-47 193.0 120 77.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.0e-46 191.8 392 36.7
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 8.2e-33 145.6 87 81.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.4e-23 113.6 76 71.1
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 5.9e-23 112.8 58 84.5
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.4e-19 101.7 80 60.0
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.8e-11 74.7 41 78.0
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.8e-09 67.4 109 39.4
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 4.1e-08 63.5 49 63.3
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 4.1e-08 63.5 66 54.5
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 9.1e-08 62.4 45 68.9


User provided reference genes

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