Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017423m.g Eutrema salsugineum HOM05D001206 ORTHO05D045366 3.6e-51 204.9 127 100.0
Thhalv10003835m.g Eutrema salsugineum HOM05D001206 ORTHO05D002068 4.0e-34 148.3 75 97.3
BraA06t26053Z Brassica rapa HOM05D001206 ORTHO05D002068 2.4e-31 139.0 75 89.3
BcaC01g02682 Brassica carinata HOM05D001206 ORTHO05D002068 3.2e-31 138.7 75 88.0
C03p61820 Brassica napus HOM05D001206 ORTHO05D002068 3.2e-31 138.7 75 88.0
BolC3t18443H Brassica oleracea HOM05D001206 ORTHO05D002068 3.2e-31 138.7 75 88.0
Sp2g27530 Schrenkiella parvula HOM05D001206 ORTHO05D002068 3.2e-31 138.7 75 92.0
BcaB07g29744 Brassica carinata HOM05D001206 ORTHO05D002068 4.2e-31 138.3 75 88.0
AL8G41810 Arabidopsis lyrata HOM05D001206 ORTHO05D002068 1.2e-30 136.7 75 88.0
BcaC03g18264 Brassica carinata HOM05D001206 ORTHO05D002068 1.6e-30 136.3 88 77.3
A06p31100 Brassica napus HOM05D001206 ORTHO05D002068 1.6e-30 136.3 75 88.0
C02p63380 Brassica napus HOM05D001206 ORTHO05D002068 1.6e-30 136.3 88 77.3
BolC2t12406H Brassica oleracea HOM05D001206 ORTHO05D002068 1.6e-30 136.3 88 77.3
AT5G64440 Arabidopsis thaliana HOM05D001206 ORTHO05D002068 4.6e-30 134.8 75 88.0
CARHR278410 Cardamine hirsuta HOM05D001206 ORTHO05D002068 6.0e-30 134.4 74 90.5
A02p43320 Brassica napus HOM05D001206 ORTHO05D002068 7.9e-30 134.0 88 73.9
BraA02t09258Z Brassica rapa HOM05D001206 ORTHO05D002068 7.9e-30 134.0 88 73.9
Carub.0008s2524 Capsella rubella HOM05D001206 ORTHO05D002068 3.3e-28 128.6 75 84.0
Aa31LG1G17460 Aethionema arabicum HOM05D001206 ORTHO05D002068 2.8e-27 125.6 88 71.6
THA.LOC104799673 Tarenaya hassleriana HOM05D001206 ORTHO05D002068 1.1e-23 113.6 75 74.7
unitig_21.g20702 Utricularia gibba HOM05D001206 ORTHO05D002068 1.5e-20 103.2 75 64.0
PSO700G0067 Papaver somniferum HOM05D001206 ORTHO05D002068 5.7e-20 101.3 75 62.7
Dinv08963 Davidia involucrata HOM05D001206 ORTHO05D002068 1.3e-19 100.1 75 61.3
MD05G1050200 Malus domestica HOM05D001206 ORTHO05D002068 2.2e-19 99.4 75 58.7
Oeu041088.1 Olea europaea HOM05D001206 ORTHO05D002068 2.8e-19 99.0 75 60.0
Thecc.02G124600 Theobroma cacao HOM05D001206 ORTHO05D002068 4.8e-19 98.2 75 61.3
PSO761G0240 Papaver somniferum HOM05D001206 ORTHO05D002068 6.3e-19 97.8 75 60.0
Manes.10G094600 Manihot esculenta HOM05D001206 ORTHO05D002068 8.2e-19 97.4 75 61.3
GSVIVG01038529001 Vitis vinifera HOM05D001206 ORTHO05D002068 8.2e-19 97.4 75 61.3
Gohir.A13G049200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 2.4e-18 95.9 75 60.0
Gohir.D01G147500 Gossypium hirsutum HOM05D001206 ORTHO05D002068 2.4e-18 95.9 75 57.3
Gohir.D12G018200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 2.4e-18 95.9 75 57.3
Gorai.008G018500 Gossypium raimondii HOM05D001206 ORTHO05D002068 2.4e-18 95.9 75 57.3
Gorai.010G111500 Gossypium raimondii HOM05D001206 ORTHO05D002068 2.4e-18 95.9 75 57.3
Duzib248G0450 Durio zibethinus HOM05D001206 ORTHO05D002068 3.1e-18 95.5 75 58.7
FAN15G0254 Fragaria x ananassa HOM05D001206 ORTHO05D002068 3.1e-18 95.5 75 57.3
Lj5A225G70 Lonicera japonica HOM05D001206 ORTHO05D002068 3.1e-18 95.5 75 58.7
Cpa.g.sc20.48 Carica papaya HOM05D001206 ORTHO05D002068 4.1e-18 95.1 75 57.3
Gohir.D13G047700 Gossypium hirsutum HOM05D001206 ORTHO05D002068 4.1e-18 95.1 75 60.0
Gorai.013G053300 Gossypium raimondii HOM05D001206 ORTHO05D002068 4.1e-18 95.1 75 60.0
Gohir.A12G017600 Gossypium hirsutum HOM05D001206 ORTHO05D002068 5.3e-18 94.7 75 56.0
Gorai.004G133000 Gossypium raimondii HOM05D001206 ORTHO05D002068 5.3e-18 94.7 75 57.3
TPR.G32630 Trifolium pratense HOM05D001206 ORTHO05D002068 5.3e-18 94.7 79 53.2
TAR628G1628 Trochodendron aralioides HOM05D001206 ORTHO05D002068 9.0e-18 94.0 76 57.9
MSTRG.20250 Avicennia marina HOM05D001206 ORTHO05D002068 1.2e-17 93.6 78 57.7
FvH4_2g11120 Fragaria vesca HOM05D001206 ORTHO05D002068 1.2e-17 93.6 75 56.0
FAN24G1517 Fragaria x ananassa HOM05D001206 ORTHO05D002068 1.2e-17 93.6 75 56.0
Eucgr.I02569 Eucalyptus grandis HOM05D001206 ORTHO05D002068 1.5e-17 93.2 78 55.1
RcHm_v2.0_Chr6g0269381 Rosa chinensis HOM05D001206 ORTHO05D002068 1.5e-17 93.2 75 56.0
FAN27G1668 Fragaria x ananassa HOM05D001206 ORTHO05D002068 2.0e-17 92.8 75 56.0
arahy.Tifrunner.gnm1.ann1.02U3XB Arachis hypogaea HOM05D001206 ORTHO05D002068 2.6e-17 92.4 75 56.0
arahy.Tifrunner.gnm1.ann1.3DT0RH Arachis hypogaea HOM05D001206 ORTHO05D002068 2.6e-17 92.4 75 56.0
MSTRG.16638 Avicennia marina HOM05D001206 ORTHO05D002068 2.6e-17 92.4 78 56.4
Ca_00185_v3 Cicer arietinum L. HOM05D001206 ORTHO05D002068 2.6e-17 92.4 75 56.0
Glyma.15G060700 Glycine max HOM05D001206 ORTHO05D002068 2.6e-17 92.4 73 60.3
Nitab4.5_0006854g0060 Nicotiana tabacum HOM05D001206 ORTHO05D002068 2.6e-17 92.4 75 60.0
Nitab4.5_0010352g0070 Nicotiana tabacum HOM05D001206 ORTHO05D002068 2.6e-17 92.4 75 60.0
ATR0800G073 Amborella trichopoda HOM05D001206 ORTHO05D002068 3.4e-17 92.0 75 54.7
Cc02_g20550 Coffea canephora HOM05D001206 ORTHO05D002068 3.4e-17 92.0 83 55.4
DCAR_029282 Daucus carota HOM05D001206 ORTHO05D002068 3.4e-17 92.0 75 57.3
CiPaw.05G026500 Carya illinoinensis HOM05D001206 ORTHO05D002068 4.5e-17 91.7 73 58.9
Nn1g05689 Nelumbo nucifera HOM05D001206 ORTHO05D002068 4.5e-17 91.7 75 57.3
Lalb_Chr20g0122751 Lupinus albus HOM05D001206 ORTHO05D002068 5.9e-17 91.3 75 53.3
CANSAT54G1477 Cannabis sativa HOM05D001206 ORTHO05D002068 1.0e-16 90.5 87 50.6
Haze_10389 Corylus avellana HOM05D001206 ORTHO05D002068 1.0e-16 90.5 73 57.5
Psat1g212600 Pisum sativum HOM05D001206 ORTHO05D002068 1.3e-16 90.1 75 54.7
TWI23G1316 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 1.3e-16 90.1 74 58.1
CiPaw.05G026300 Carya illinoinensis HOM05D001206 ORTHO05D002068 1.7e-16 89.7 73 57.5
ECA234G3918 Erigeron canadensis HOM05D001206 ORTHO05D002068 1.7e-16 89.7 75 57.3
Eucgr.I02568 Eucalyptus grandis HOM05D001206 ORTHO05D002068 1.7e-16 89.7 78 55.1
PGR142G3443 Punica granatum HOM05D001206 ORTHO05D002068 1.7e-16 89.7 75 54.7
Glyma.13G254200 Glycine max HOM05D001206 ORTHO05D002068 2.2e-16 89.4 78 56.4
Lj6g0027071 Lotus japonicus HOM05D001206 ORTHO05D002068 2.2e-16 89.4 75 57.3
VMungo0540G1701 Vigna mungo HOM05D001206 ORTHO05D002068 2.2e-16 89.4 73 58.9
Migut.B00517 Erythranthe guttata HOM05D001206 ORTHO05D002068 2.9e-16 89.0 75 56.0
Hma1.2p1_0908F.1_g235710 Hydrangea macrophylla HOM05D001206 ORTHO05D002068 2.9e-16 89.0 75 54.7
HanXRQChr10g0291231 Helianthus annuus HOM05D001206 ORTHO05D002068 3.8e-16 88.6 70 58.6
TWI14G1249 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 3.8e-16 88.6 75 56.0
PGSC0003DMG400003120 Solanum tuberosum HOM05D001206 ORTHO05D002068 5.0e-16 88.2 75 56.0
Lsat_1_v5_gn_5_110881 Lactuca sativa HOM05D001206 ORTHO05D002068 6.5e-16 87.8 75 53.3
EL10Ac9g22131 Beta vulgaris HOM05D001206 ORTHO05D002068 8.5e-16 87.4 75 54.7
ClCG09G016410 Citrullus lanatus HOM05D001206 ORTHO05D002068 8.5e-16 87.4 74 55.4
Nitab4.5_0010352g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 8.5e-16 87.4 78 53.8
QL11p026734 Quercus lobata HOM05D001206 ORTHO05D002068 8.5e-16 87.4 75 54.7
DCAR_005658 Daucus carota HOM05D001206 ORTHO05D002068 1.1e-15 87.0 75 53.3
ECA236G0460 Erigeron canadensis HOM05D001206 ORTHO05D002068 1.1e-15 87.0 75 56.0
Oeu059886.1 Olea europaea HOM05D001206 ORTHO05D002068 1.1e-15 87.0 75 57.3
Actinidia00325 Actinidia chinensis HOM05D001206 ORTHO05D002068 1.4e-15 86.7 73 58.9
CAN.G504.50 Capsicum annuum HOM05D001206 ORTHO05D002068 1.4e-15 86.7 75 53.3
Zm00001eb418940 Zea mays HOM05D001206 ORTHO05D002068 1.4e-15 86.7 75 50.7
Nitab4.5_0002335g0070 Nicotiana tabacum HOM05D001206 ORTHO05D002068 1.9e-15 86.3 78 52.6
Medtr2g010180 Medicago truncatula HOM05D001206 ORTHO05D002068 2.5e-15 85.9 75 52.0
Peaxi162Scf00016g03464 Petunia axillaris HOM05D001206 ORTHO05D002068 2.5e-15 85.9 75 56.0
Phvul.006G199100 Phaseolus vulgaris HOM05D001206 ORTHO05D002068 2.5e-15 85.9 73 54.8
CSS0000304 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 3.2e-15 85.5 75 58.7
Solyc01g106330.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 3.2e-15 85.5 75 53.3
Actinidia02414 Actinidia chinensis HOM05D001206 ORTHO05D002068 4.2e-15 85.1 73 57.5
Lj9A342T54 Lonicera japonica HOM05D001206 ORTHO05D002068 4.2e-15 85.1 88 47.7
Peaxi162Scf00299g00236 Petunia axillaris HOM05D001206 ORTHO05D002068 4.2e-15 85.1 75 56.0
Sopen01g048710 Solanum pennellii HOM05D001206 ORTHO05D002068 4.2e-15 85.1 77 51.9
Aqoxy6G00631 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 5.5e-15 84.7 73 53.4
CAN.G504.53 Capsicum annuum HOM05D001206 ORTHO05D002068 5.5e-15 84.7 75 56.0
AUR62027076 Chenopodium quinoa HOM05D001206 ORTHO05D002068 5.5e-15 84.7 75 53.3
CsaV3_7G007390 Cucumis sativus L. HOM05D001206 ORTHO05D002068 7.2e-15 84.3 74 54.1
Os04g0102700 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D002068 9.4e-15 84.0 75 46.7
CSS0023121 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 1.2e-14 83.6 73 56.2
CSS0046406 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 1.2e-14 83.6 73 56.2
CAN.G504.54 Capsicum annuum HOM05D001206 ORTHO05D002068 1.2e-14 83.6 75 56.0
CDE07G0825 Ceratophyllum demersum HOM05D001206 ORTHO05D002068 1.2e-14 83.6 73 52.1
MBI16_g44751_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D002068 1.2e-14 83.6 74 48.6
Rhsim05G0095600 Rhododendron simsii HOM05D001206 ORTHO05D002068 1.2e-14 83.6 73 56.2
SalBow6G5084 Salvia bowleyana HOM05D001206 ORTHO05D002068 1.2e-14 83.6 75 54.7
Sed0003330 Sechium edule HOM05D001206 ORTHO05D002068 1.2e-14 83.6 74 51.4
Sopen01g048700 Solanum pennellii HOM05D001206 ORTHO05D002068 1.2e-14 83.6 75 53.3
Ah.01g024200 Amaranthus hybridus HOM05D001206 ORTHO05D002068 2.1e-14 82.8 75 52.0
CDE04G3774 Ceratophyllum demersum HOM05D001206 ORTHO05D002068 2.1e-14 82.8 73 52.1
Solyc01g106360.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 2.1e-14 82.8 75 54.7
Sopen01g048730 Solanum pennellii HOM05D001206 ORTHO05D002068 2.1e-14 82.8 75 54.7
Ah.01g007260 Amaranthus hybridus HOM05D001206 ORTHO05D002068 3.6e-14 82.0 75 49.3
Solyc01g106340.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 3.6e-14 82.0 77 50.6
AUR62030916 Chenopodium quinoa HOM05D001206 ORTHO05D002068 4.6e-14 81.6 75 52.0
HanXRQChr08g0227111 Helianthus annuus HOM05D001206 ORTHO05D002068 4.6e-14 81.6 74 52.7
Lsat_1_v5_gn_7_83060 Lactuca sativa HOM05D001206 ORTHO05D002068 4.6e-14 81.6 77 51.9
HPP92_017097 Vanilla planifolia HOM05D001206 ORTHO05D002068 4.6e-14 81.6 75 50.7
Potri.001G285900 Populus trichocarpa HOM05D001206 ORTHO05D002068 6.1e-14 81.3 73 49.3
HPP92_017107 Vanilla planifolia HOM05D001206 ORTHO05D002068 6.1e-14 81.3 75 50.7
PGSC0003DMG402003118 Solanum tuberosum HOM05D001206 ORTHO05D002068 7.9e-14 80.9 75 53.3
MELO3C018563.2 Cucumis melo HOM05D001206 ORTHO05D002068 1.8e-13 79.7 74 51.4
Nitab4.5_0009020g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 1.8e-13 79.7 75 54.7
Hund00402 Selenicereus undatus HOM05D001206 ORTHO05D002068 2.3e-13 79.3 73 50.7
Peaxi162Scf00152g00738 Petunia axillaris HOM05D001206 ORTHO05D002068 5.1e-13 78.2 75 52.0
PGSC0003DMG400003119 Solanum tuberosum HOM05D001206 ORTHO05D002068 5.1e-13 78.2 77 51.9
Gohir.D05G115500 Gossypium hirsutum HOM05D001206 ORTHO05D002068 6.7e-13 77.8 60 61.7
PGR142G2427 Punica granatum HOM05D001206 ORTHO05D002068 6.7e-13 77.8 74 51.4
CAN.G504.51 Capsicum annuum HOM05D001206 ORTHO05D002068 1.1e-12 77.0 77 48.1
CAN.G504.52 Capsicum annuum HOM05D001206 ORTHO05D002068 1.1e-12 77.0 75 50.7
HanXRQChr08g0227101 Helianthus annuus HOM05D001206 ORTHO05D002068 1.1e-12 77.0 76 48.7
RcHm_v2.0_Chr2g0133671 Rosa chinensis HOM05D001206 ORTHO05D045366 1.1e-12 77.0 55 61.8
SEGI_17157 Sequoiadendron giganteum HOM05D001206 ORTHO05D002068 1.9e-12 76.3 88 44.3
Solyc01g106350.4 Solanum lycopersicum HOM05D001206 ORTHO05D002068 7.4e-12 74.3 74 51.4
Sopen01g048720 Solanum pennellii HOM05D001206 ORTHO05D002068 7.4e-12 74.3 74 51.4
Aqoxy425s001 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 9.7e-12 73.9 60 55.0
Gohir.D07G172800 Gossypium hirsutum HOM05D001206 ORTHO05D002068 9.7e-12 73.9 91 46.2
Sabra16G0178300 Salix brachista HOM05D001206 ORTHO05D002068 1.8e-10 69.7 78 47.4
SGA_v2.0_scaffold342G49396 Striga asiatica HOM05D001206 ORTHO05D002068 1.8e-10 69.7 52 61.5
Hma1.2p1_2077F.1_g313360 Hydrangea macrophylla HOM05D001206 ORTHO05D002068 9.1e-10 67.4 119 35.3
vmacro19593 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 6.5e-08 61.2 120 35.8
Prupe.8G076300 Prunus persica HOM05D001206 ORTHO05D002068 1.2e-06 57.0 41 61.0


User provided reference genes

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