Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.6e-65 251.9 127 100.0
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.7e-38 162.2 125 68.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.3e-37 159.8 125 71.2
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.5e-36 156.4 127 67.7
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 7.4e-36 154.1 127 66.9
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.6e-35 152.9 126 64.3
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.6e-35 152.9 126 64.3
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.6e-33 145.6 125 63.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 5.8e-33 144.4 125 64.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.4e-31 139.0 116 66.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.2e-31 138.7 126 62.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.5e-28 129.8 125 60.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.6e-22 109.8 129 49.6
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.9e-22 107.5 129 49.6
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.3e-21 106.7 129 50.4
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 8.7e-21 104.0 130 47.7
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-20 103.6 114 51.8
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 4.3e-20 101.7 113 48.7
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.3e-20 101.7 129 48.1
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 5.7e-20 101.3 126 47.6
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 7.4e-20 100.9 126 47.6
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 2.2e-19 99.4 126 46.0
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 2.2e-19 99.4 126 46.0
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 2.2e-19 99.4 130 47.7
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.8e-19 99.0 129 48.1
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.4e-18 96.7 126 41.3
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.4e-18 95.9 128 45.3
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 3.1e-18 95.5 134 40.3
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 5.3e-18 94.7 129 46.5
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 5.3e-18 94.7 129 45.7
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 6.9e-18 94.4 129 45.7
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-17 93.6 129 45.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-17 93.6 129 45.7
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 5.9e-17 91.3 89 46.1
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.7e-16 89.7 115 40.9
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.2e-16 89.4 89 50.6
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 6.5e-16 87.8 128 39.8
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.4e-15 86.7 129 38.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.4e-15 86.7 110 42.7
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.9e-15 86.3 82 48.8
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 4.2e-15 85.1 88 44.3
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 9.4e-15 84.0 88 46.6
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 9.4e-15 84.0 118 41.5
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.2e-14 83.6 100 45.0
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 1.6e-14 83.2 130 36.9
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.6e-14 83.2 86 46.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.1e-14 82.8 84 47.6
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.1e-14 82.8 89 47.2
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.7e-14 82.4 129 44.2
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.7e-14 82.4 130 36.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.7e-14 82.4 130 36.9
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.6e-14 82.0 112 40.2
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.0e-13 80.5 90 41.1
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.0e-13 80.5 84 46.4
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.0e-13 80.5 117 37.6
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.4e-13 80.1 94 43.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.4e-13 80.1 125 43.2
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.8e-13 79.7 82 47.6
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.0e-13 79.0 129 34.9
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 5.1e-13 78.2 84 46.4
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 5.1e-13 78.2 88 43.2
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 5.1e-13 78.2 97 43.3
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 8.8e-13 77.4 98 42.9
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 8.8e-13 77.4 104 42.3
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 8.8e-13 77.4 86 40.7
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.1e-12 77.0 109 38.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.5e-12 76.6 88 45.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.9e-12 76.3 131 36.6
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.5e-12 75.9 86 39.5
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.5e-12 75.9 81 45.7
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.3e-12 75.5 88 43.2
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.3e-12 75.5 86 39.5
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.3e-12 75.5 86 39.5
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.3e-12 75.5 83 47.0
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 3.3e-12 75.5 83 47.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.3e-12 75.1 102 41.2
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.3e-12 75.1 106 43.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.7e-12 74.7 129 37.2
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.7e-12 74.7 85 44.7
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 5.7e-12 74.7 125 38.4
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 5.7e-12 74.7 86 39.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 5.7e-12 74.7 88 45.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 7.4e-12 74.3 80 46.2
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 7.4e-12 74.3 83 47.0
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.7e-12 73.9 111 39.6
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 9.7e-12 73.9 89 42.7
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 9.7e-12 73.9 111 39.6
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 9.7e-12 73.9 87 40.2
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 9.7e-12 73.9 114 37.7
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 9.7e-12 73.9 86 40.7
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.7e-11 73.2 99 39.4
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 2.2e-11 72.8 89 41.6
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.2e-11 72.8 91 40.7
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.2e-11 72.8 85 47.1
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.2e-11 72.8 86 43.0
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.7e-11 72.0 89 44.9
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 3.7e-11 72.0 95 44.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-11 71.6 86 41.9
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-11 71.6 86 41.9
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-11 71.6 86 41.9
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-11 71.6 86 41.9
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 4.8e-11 71.6 136 36.8
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 6.3e-11 71.2 89 42.7
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.3e-11 71.2 88 42.0
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 6.3e-11 71.2 91 44.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 6.3e-11 71.2 91 44.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 6.3e-11 71.2 117 37.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 6.3e-11 71.2 104 38.5
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.2e-11 70.9 80 43.8
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 8.2e-11 70.9 80 46.2
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-10 70.5 81 45.7
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-10 70.5 84 44.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.1e-10 70.5 99 36.4
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.1e-10 70.5 88 39.8
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.1e-10 70.5 95 40.0
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.4e-10 70.1 81 42.0
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 112 36.6
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.8e-10 69.7 86 44.2
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.8e-10 69.7 87 47.1
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 2.4e-10 69.3 109 39.4
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.4e-10 69.3 129 37.2
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.4e-10 69.3 131 40.5
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.4e-10 69.3 91 37.4
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.1e-10 68.9 129 38.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.1e-10 68.9 87 44.8
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.1e-10 68.9 82 43.9
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.1e-10 68.9 99 44.4
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.1e-10 68.6 91 41.8
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 4.1e-10 68.6 91 40.7
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 4.1e-10 68.6 67 47.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 4.1e-10 68.6 128 36.7
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.3e-10 68.2 106 41.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 5.3e-10 68.2 137 36.5
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 5.3e-10 68.2 125 38.4
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 5.3e-10 68.2 116 36.2
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.9e-10 67.8 114 36.8
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 6.9e-10 67.8 80 41.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.9e-10 67.8 127 36.2
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 9.1e-10 67.4 82 48.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.1e-10 67.4 82 50.0
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 9.1e-10 67.4 83 48.2
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.5e-09 66.6 78 42.3
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.6e-09 65.9 81 42.0
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 116 43.1
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 80 48.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 116 45.7
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.4e-09 65.5 114 36.8
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.4e-09 65.5 116 42.2
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 3.4e-09 65.5 83 44.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 4.5e-09 65.1 115 35.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 5.9e-09 64.7 90 37.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 5.9e-09 64.7 131 35.9
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.9e-09 64.7 87 41.4
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.9e-09 64.7 82 39.0
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 5.9e-09 64.7 116 37.9
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 7.7e-09 64.3 120 41.7
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.0e-08 63.9 129 31.8
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.0e-08 63.9 79 44.3
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.7e-08 63.2 95 40.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.2e-08 62.8 123 35.8
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.9e-08 62.4 126 36.5
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.9e-08 62.4 109 35.8
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.9e-08 62.4 126 34.1
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.0e-08 61.6 79 40.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 5.0e-08 61.6 108 37.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 5.0e-08 61.6 84 39.3
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 8.5e-08 60.8 119 34.5
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.5e-08 60.8 118 33.1
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.4e-07 60.1 83 36.1
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.9e-07 59.7 91 39.6
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.5e-07 59.3 81 43.2
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.5e-07 59.3 83 36.1
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.2e-07 58.9 80 37.5
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 5.5e-07 58.2 84 39.3
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.2e-07 57.8 81 48.1
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.2e-06 57.0 112 31.2
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.7e-06 55.8 92 34.8
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 3.6e-06 55.5 80 36.2
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.9e-06 54.3 74 39.2


User provided reference genes

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