Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 4.8e-85 317.8 160 100.0
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 3.8e-82 308.1 160 96.2
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 8.6e-82 307.0 160 95.0
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.3e-81 305.1 160 95.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 5.5e-81 304.3 160 93.8
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.8e-79 299.3 160 93.1
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.3e-79 298.9 160 91.2
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 4.0e-79 298.1 161 94.4
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 4.0e-79 298.1 161 93.8
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 4.0e-79 298.1 161 93.8
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 4.0e-79 298.1 161 93.8
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 4.0e-79 298.1 161 93.8
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.2e-78 296.6 161 93.2
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 2.0e-78 295.8 161 93.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-78 295.8 161 93.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 2.0e-78 295.8 161 93.8
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.6e-78 295.4 160 90.6
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 7.5e-78 293.9 160 90.0
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-77 292.4 158 93.7
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 4.9e-77 291.2 158 93.0
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.1e-76 290.0 160 88.8
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.0e-75 285.8 160 86.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 7.5e-70 267.3 160 79.4
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 7.5e-70 267.3 160 79.4
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 7.5e-70 267.3 160 79.4
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 7.5e-70 267.3 160 79.4
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 7.5e-70 267.3 160 79.4
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 7.5e-70 267.3 160 79.4
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 9.8e-70 266.9 160 80.0
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 6.4e-69 264.2 154 82.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.4e-68 263.1 158 79.7
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 7.0e-68 260.8 154 81.2
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.2e-67 260.0 158 77.8
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.2e-67 260.0 158 77.8
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 2.0e-67 259.2 160 77.5
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.7e-67 258.8 154 79.9
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.7e-67 258.8 154 79.9
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.7e-67 258.8 158 77.8
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 4.6e-67 258.1 154 78.6
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 4.6e-67 258.1 160 76.2
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 6.0e-67 257.7 158 77.2
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 7.8e-67 257.3 160 76.2
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.0e-66 256.9 160 76.9
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.0e-66 256.9 154 78.6
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.0e-66 255.4 157 77.7
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.0e-66 255.4 155 79.4
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 5.0e-66 254.6 143 87.4
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.8
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.9e-65 252.7 160 75.6
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.3e-65 251.9 158 74.7
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.3e-65 251.9 160 74.4
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.3e-65 251.5 154 78.6
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 5.6e-65 251.1 154 76.6
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 5.6e-65 251.1 158 75.9
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 7.3e-65 250.8 160 75.6
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 9.5e-65 250.4 154 75.3
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 9.5e-65 250.4 160 73.1
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 9.5e-65 250.4 154 76.0
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.8e-64 248.8 154 74.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 3.6e-64 248.4 160 73.1
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 76.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 6.2e-64 247.7 157 76.4
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.2e-64 247.7 154 75.3
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 8.0e-64 247.3 154 75.3
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.1e-63 246.9 157 74.5
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.1e-63 246.9 160 72.5
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.4e-63 246.5 158 74.7
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 157 73.9
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 154 77.3
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 154 77.3
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 3.1e-63 245.4 159 73.6
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 3.1e-63 245.4 157 75.8
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 4.0e-63 245.0 154 77.3
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 4.0e-63 245.0 158 75.9
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 154 74.0
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.2e-63 244.6 153 74.5
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 5.2e-63 244.6 153 74.5
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 8.9e-63 243.8 160 71.9
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 8.9e-63 243.8 157 75.8
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.5e-62 243.0 157 73.2
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.5e-62 243.0 158 73.4
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 74.7
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 74.0
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 76.0
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.6e-62 242.3 155 76.1
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.6e-62 242.3 158 72.8
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 3.4e-62 241.9 154 76.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 3.4e-62 241.9 158 73.4
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.4e-62 241.9 157 75.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.3e-61 240.0 158 71.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.7e-61 239.6 157 74.5
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.4e-60 236.5 154 73.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 1.4e-60 236.5 157 72.0
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.4e-60 236.5 154 72.1
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.2e-59 233.4 154 72.1
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 3.5e-59 231.9 154 72.7
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 4.6e-59 231.5 153 69.9
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.3e-58 229.9 138 79.7
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.3e-58 229.9 160 71.2
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 3.0e-58 228.8 160 68.1
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 3.9e-58 228.4 160 70.0
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 3.9e-58 228.4 158 69.6
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 5.1e-58 228.0 160 70.0
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 5.1e-58 228.0 157 70.1
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 5.1e-58 228.0 158 69.6
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 5.1e-58 228.0 155 68.4
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.1e-57 226.9 209 56.9
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.9e-57 226.1 159 69.8
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.9e-57 226.1 159 69.8
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 2.5e-57 225.7 154 68.8
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.8e-55 219.5 156 64.1
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 3.1e-55 218.8 135 78.5
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 8.9e-55 217.2 154 68.2
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 2.6e-54 215.7 144 72.9
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.9e-53 212.2 248 48.8
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 4.9e-53 211.5 144 70.1
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 2.4e-52 209.1 125 80.0
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 5.4e-52 208.0 144 67.4
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.9e-50 201.8 161 64.0
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 4.3e-49 198.4 123 78.9
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 8.1e-48 194.1 162 59.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 3.1e-47 192.2 209 48.3
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 7.6e-46 187.6 110 80.0
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 9.9e-46 187.2 158 57.6
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.6e-43 179.9 112 73.2
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 2.1e-43 179.5 101 91.1
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 6.0e-43 177.9 301 37.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 6.6e-42 174.5 187 49.7
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-41 173.7 133 68.4
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 4.4e-38 161.8 142 60.6
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 2.3e-34 149.4 146 63.7
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 3.0e-34 149.1 77 92.2
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.0e-34 149.1 154 49.4
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.5e-33 146.7 98 73.5
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.6e-32 143.3 149 50.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.6e-32 142.1 149 49.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 8.1e-32 141.0 113 62.8
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.9e-31 137.9 147 53.1
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.2e-30 137.1 152 47.4
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.2e-28 129.0 76 84.2
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.5e-25 120.2 146 44.5
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 7.4e-25 117.9 78 79.5
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-23 113.2 101 66.3
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 9.0e-23 110.9 126 43.7
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 8.4e-21 104.4 65 73.8
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.4e-21 104.4 96 58.3
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.4e-21 104.4 96 58.3
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-20 104.0 65 73.8
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 2.1e-19 99.8 64 73.4
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.3e-18 97.1 127 40.9
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.0e-18 95.9 64 70.3
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 2.7e-11 72.8 146 35.6
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.5e-09 67.0 96 43.8
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 6.9e-07 58.2 69 49.3
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 6.9e-07 58.2 49 63.3
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-06 56.6 69 47.8


User provided reference genes

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