Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.0e-86 322.4 165 100.0
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.3e-77 293.1 165 83.6
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 5.0e-77 291.2 165 83.6
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 5.0e-77 291.2 165 83.6
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 5.0e-77 291.2 165 83.6
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 5.5e-76 287.7 153 88.2
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 6.1e-75 284.3 153 86.3
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.8e-74 282.7 153 87.6
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 4.0e-74 281.6 153 85.0
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 8.8e-74 280.4 153 84.3
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 8.8e-74 280.4 153 84.3
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-71 273.1 148 85.1
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 7.0e-71 270.8 169 78.1
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.0e-69 266.9 165 80.6
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.6e-67 259.6 154 80.5
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.6e-67 258.5 155 80.6
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-49 199.9 151 66.2
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.6e-49 199.1 143 69.2
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 7.5e-49 197.6 152 65.1
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 7.5e-49 197.6 152 65.1
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.8e-49 197.2 169 62.1
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.3e-48 196.8 151 66.2
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.9e-47 193.0 157 63.7
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.9e-47 193.0 151 66.2
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 1.2e-46 190.3 169 59.2
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-46 189.9 165 61.2
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-46 189.9 165 61.2
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.6e-46 189.9 145 66.9
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.3e-45 186.8 151 64.9
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.7e-45 186.4 161 60.2
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.7e-45 186.4 161 60.2
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.3e-45 186.0 165 60.6
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.1e-45 184.9 143 64.3
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-44 182.6 140 64.3
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 3.6e-43 178.7 96 84.4
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.9e-40 169.1 129 63.6
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.9e-39 166.4 139 59.0
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-39 166.0 138 61.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.7e-38 162.5 135 61.5
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-38 161.8 138 58.7
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-37 160.2 129 62.8
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-37 160.2 129 62.8
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-37 160.2 129 62.8
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.0e-37 159.1 128 60.2
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 3.9e-37 158.7 133 60.9
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.5e-36 156.0 128 59.4
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 4.3e-36 155.2 128 59.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 5.6e-36 154.8 129 60.5
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 5.6e-36 154.8 129 60.5
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 5.6e-36 154.8 129 60.5
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 5.6e-36 154.8 129 60.5
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 5.6e-36 154.8 129 60.5
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.6e-35 152.1 129 58.9
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 5.8e-33 144.8 126 57.9
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 9.9e-33 144.1 129 55.8
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.4e-32 141.4 134 54.5
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.7e-30 136.0 98 67.3
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 1.1e-26 124.0 137 48.2
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.4e-26 122.9 142 43.7
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 2.4e-26 122.9 137 45.3
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.1e-26 122.5 135 48.9
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 3.1e-26 122.5 142 45.1
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 5.3e-26 121.7 144 42.4
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 6.9e-26 121.3 132 47.0
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.2e-25 120.6 140 45.0
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.2e-25 120.6 139 43.9
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.0e-25 119.8 139 43.2
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 4.5e-25 118.6 148 42.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.8e-25 118.2 159 40.9
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 7.6e-25 117.9 138 44.9
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 9.9e-25 117.5 148 45.9
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.3e-24 117.1 148 43.9
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.3e-24 117.1 144 45.1
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.7e-24 116.7 133 48.1
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 2.2e-24 116.3 147 39.5
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.2e-24 116.3 128 46.9
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 2.9e-24 115.9 144 45.1
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 2.9e-24 115.9 147 45.6
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.9e-24 115.9 153 40.5
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.9e-24 115.2 135 46.7
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 8.4e-24 114.4 135 44.4
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 8.4e-24 114.4 143 45.5
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.1e-23 114.0 143 39.9
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.4e-23 113.6 154 39.6
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.4e-23 113.6 144 41.7
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-23 113.6 139 43.9
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-23 113.6 132 44.7
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 2.4e-23 112.8 145 43.4
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 3.2e-23 112.5 151 39.7
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 4.2e-23 112.1 126 46.8
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 4.2e-23 112.1 135 45.2
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.4e-23 111.7 141 42.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.4e-23 111.7 141 42.6
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 7.1e-23 111.3 128 43.8
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 7.1e-23 111.3 151 38.4
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 9.3e-23 110.9 144 42.4
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 9.3e-23 110.9 145 42.1
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 9.3e-23 110.9 143 40.6
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 9.3e-23 110.9 157 38.2
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.2e-22 110.5 142 41.5
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.1e-22 109.8 144 43.8
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.1e-22 109.8 145 43.4
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 2.1e-22 109.8 137 43.8
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.7e-22 109.4 150 39.3
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.6e-22 108.6 138 44.2
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 6.0e-22 108.2 148 39.9
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 7.9e-22 107.8 142 41.5
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 7.9e-22 107.8 134 47.0
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.0e-21 107.5 157 40.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.0e-21 107.5 164 38.4
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.8e-21 106.7 144 39.6
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.8e-21 106.7 141 41.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.3e-21 106.3 158 39.2
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.3e-21 106.3 155 39.4
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.0e-21 105.9 123 43.9
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 3.0e-21 105.9 145 42.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 3.0e-21 105.9 134 42.5
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 5.1e-21 105.1 140 42.9
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 5.1e-21 105.1 163 36.8
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.7e-21 104.8 132 43.9
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 6.7e-21 104.8 161 35.4
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.7e-21 104.4 147 39.5
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.7e-21 104.4 147 39.5
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.1e-20 104.0 123 45.5
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.1e-20 104.0 136 41.9
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.5e-20 103.6 137 42.3
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.5e-20 103.6 145 39.3
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.5e-20 103.6 145 38.6
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.5e-20 103.6 139 40.3
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.9e-20 103.2 156 38.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.9e-20 103.2 132 45.5
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 2.5e-20 102.8 163 40.5
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.5e-20 102.8 131 44.3
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 3.3e-20 102.4 142 38.7
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 3.3e-20 102.4 137 43.8
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.3e-20 102.4 131 44.3
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 4.3e-20 102.1 151 38.4
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.6e-20 101.7 145 40.7
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 7.4e-20 101.3 149 40.3
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.6e-20 100.9 142 39.4
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.3e-19 100.5 149 40.3
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.3e-19 100.5 149 40.3
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.6e-19 100.1 136 41.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.6e-19 100.1 125 42.4
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.6e-19 100.1 136 41.2
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.6e-19 100.1 139 42.4
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.6e-19 100.1 139 39.6
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 2.1e-19 99.8 138 42.0
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 2.1e-19 99.8 134 38.8
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.8e-19 99.4 156 39.1
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 4.8e-19 98.6 149 38.3
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 4.8e-19 98.6 134 44.0
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 6.2e-19 98.2 132 40.9
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 8.1e-19 97.8 136 41.9
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.1e-18 97.4 138 40.6
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.1e-18 97.4 149 38.3
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.1e-18 97.4 132 40.2
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.4e-18 97.1 147 39.5
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.8e-18 96.7 149 38.9
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.8e-18 96.7 146 39.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 2.4e-18 96.3 137 42.3
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.1e-18 95.9 150 37.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.0e-18 95.5 150 37.3
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 4.0e-18 95.5 136 36.8
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.3e-18 95.1 146 39.0
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 5.3e-18 95.1 136 36.8
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 6.9e-18 94.7 155 38.7
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-17 94.0 122 41.8
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.4e-17 92.4 130 40.8
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.2e-16 89.7 153 38.6
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.9e-15 86.7 145 36.6
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.9e-15 86.7 157 35.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.4e-15 86.3 91 46.2
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.2e-15 85.5 122 40.2
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.7e-14 82.8 105 44.8
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 6.7e-13 78.2 146 32.9
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.5e-12 76.3 111 37.8
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.5e-12 76.3 104 36.5
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 1.2e-09 67.4 89 47.2
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 1.3e-08 63.9 65 55.4
Dinv34907 Davidia involucrata HOM05D003328 ORTHO05D003722 1.6e-06 57.0 120 30.8
QL02p065219 Quercus lobata HOM05D003328 ORTHO05D003722 4.6e-06 55.5 120 28.3


User provided reference genes

Program Settings