Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 9.0e-90 333.6 168 100.0
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 8.1e-83 310.5 167 92.2
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.1e-82 310.1 167 92.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 4.5e-81 304.7 168 91.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 5.8e-81 304.3 167 91.6
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 9.9e-81 303.5 168 92.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 9.9e-81 303.5 168 92.3
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.2e-80 302.4 167 90.4
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 4.9e-80 301.2 168 91.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 8.4e-80 300.4 168 91.1
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.4e-79 298.9 168 90.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 4.2e-79 298.1 168 89.9
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 9.3e-79 297.0 169 90.5
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 4.6e-78 294.7 169 88.8
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.9e-77 291.6 167 87.4
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.8e-75 284.6 167 85.6
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 3.2e-71 271.9 169 82.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 5.5e-71 271.2 167 82.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 5.5e-71 271.2 167 82.6
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.1e-67 259.2 162 81.5
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 8.7e-61 237.3 172 73.3
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.0e-56 223.8 165 67.9
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.3e-56 223.4 166 68.7
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.7e-56 223.0 166 68.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.2e-56 222.6 167 68.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 3.8e-56 221.9 166 67.5
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.5e-56 221.1 167 67.7
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.5e-56 220.7 166 68.1
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.1e-55 220.3 167 68.3
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.1e-55 220.3 166 66.9
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.4e-55 219.9 166 67.5
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.9e-55 219.5 166 68.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.2e-55 218.8 166 66.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 9.4e-55 217.2 167 67.1
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.2e-54 216.9 167 66.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 1.6e-54 216.5 167 65.9
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.7e-54 215.7 167 66.5
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.6e-54 214.9 169 66.3
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.1e-54 214.5 166 65.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.0e-53 213.8 166 67.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.0e-53 213.8 167 67.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.8e-53 213.0 166 66.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 3.0e-53 212.2 131 80.9
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 5.1e-53 211.5 166 65.7
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 5.1e-53 211.5 166 64.5
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 5.1e-53 211.5 166 65.7
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 6.7e-53 211.1 167 65.9
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.8e-53 210.7 167 64.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 2.0e-52 209.5 166 65.7
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.5e-52 209.1 167 65.3
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 2.5e-52 209.1 168 66.1
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.3e-52 208.8 167 64.7
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.3e-52 208.8 168 64.9
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 4.3e-52 208.4 167 64.1
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 4.3e-52 208.4 167 63.5
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 5.7e-52 208.0 167 64.1
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 7.4e-52 207.6 164 65.2
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 9.7e-52 207.2 166 63.9
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.3e-51 206.8 113 91.2
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 4.8e-51 204.9 170 60.0
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 6.3e-51 204.5 169 62.1
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 8.2e-51 204.1 167 62.3
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 62.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.4e-50 202.6 167 61.1
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.1e-50 201.8 167 64.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.9e-50 201.1 167 64.7
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 6.9e-50 201.1 169 63.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 9.1e-50 200.7 169 62.7
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.0e-49 199.5 127 77.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.0e-49 199.5 167 61.7
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.6e-49 199.1 165 62.4
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.4e-49 198.7 165 62.4
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 3.4e-49 198.7 165 62.4
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 4.5e-49 198.4 165 62.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 5.9e-49 198.0 165 63.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 7.7e-49 197.6 165 62.4
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.0e-48 197.2 165 60.6
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.3e-48 196.8 165 62.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.2e-48 196.1 165 61.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.2e-48 196.1 160 61.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.9e-48 195.7 167 61.1
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.8e-48 195.3 165 62.4
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 5.0e-48 194.9 165 61.8
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.2e-47 192.2 166 60.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.2e-47 191.8 166 62.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 4.2e-47 191.8 167 59.9
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 7.2e-47 191.0 165 60.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-46 190.3 167 59.3
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.2e-46 190.3 158 62.7
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.6e-46 189.9 165 60.0
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.1e-46 189.5 167 61.1
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.1e-46 189.5 169 59.2
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.7e-46 189.1 166 60.8
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 4.7e-46 188.3 164 59.8
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.7e-46 188.3 167 59.9
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.1e-46 188.0 165 60.6
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.8e-45 186.4 165 59.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-45 186.4 166 60.2
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.3e-45 186.0 166 59.6
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.3e-45 186.0 166 59.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.9e-45 185.3 160 59.4
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 6.7e-45 184.5 166 58.4
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 8.8e-45 184.1 160 61.9
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 8.8e-45 184.1 166 60.2
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 8.8e-45 184.1 165 58.8
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.5e-44 183.3 165 58.2
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.3e-44 182.2 165 58.2
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.3e-44 182.2 129 69.8
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 7.4e-44 181.0 166 57.8
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.3e-43 180.3 172 57.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 2.2e-43 179.5 165 58.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 8.2e-43 177.6 154 59.7
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.1e-42 177.2 167 57.5
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 4.1e-42 175.3 163 56.4
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-41 173.3 166 59.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.0e-41 172.9 159 56.0
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.7e-40 169.9 170 57.1
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.7e-40 169.9 121 71.9
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.8e-40 168.7 127 67.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.1e-39 167.2 131 64.9
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.5e-39 166.0 169 56.8
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.6e-38 162.2 126 63.5
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.7e-35 153.3 126 61.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 3.1e-34 149.1 128 60.2
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.7e-33 146.0 164 46.3
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.7e-32 143.3 129 59.7
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-31 140.6 166 50.0
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.2e-31 137.9 166 49.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.4e-31 137.5 166 49.4
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.0e-29 132.5 160 46.2
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.0e-29 132.5 157 49.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 4.0e-29 132.1 170 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.2e-29 131.7 158 44.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 5.2e-29 131.7 165 49.7
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.3e-27 127.1 100 61.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.7e-27 126.7 144 45.8
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.6e-25 120.2 135 43.7
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 8.5e-24 114.4 145 45.5
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.1e-23 114.0 141 41.1
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.2e-23 111.3 78 70.5
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.6e-22 109.0 122 42.6
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.3e-21 106.3 90 61.1
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.2e-20 104.0 66 71.2
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.9e-15 86.7 97 45.4
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.2e-14 84.0 90 48.9
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.7e-14 82.0 103 40.8
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 4.7e-14 82.0 40 95.0
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.0e-13 79.3 63 54.0
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 8.9e-13 77.8 165 37.0
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.4e-12 75.9 82 48.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 7.5e-12 74.7 68 58.8
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-09 67.4 62 62.9
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.0e-09 66.6 67 59.7
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.9e-09 65.1 63 57.1
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.8e-09 64.7 41 73.2
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.3e-08 63.9 80 38.8
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.5e-07 60.5 63 42.9
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.3e-07 59.3 66 54.5
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.5e-07 57.8 62 51.6
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 9.5e-07 57.8 84 36.9
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-06 57.4 58 53.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-06 57.4 58 53.4
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.2e-06 57.4 65 50.8


User provided reference genes

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