Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 2.0e-155 552.4 273 100.0
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.4e-121 439.9 273 81.7
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 8.8e-111 404.1 267 76.4
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 2.6e-110 402.5 269 77.3
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 2.5e-105 386.0 268 76.9
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 2.5e-105 386.0 268 76.9
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 2.7e-104 382.5 263 76.4
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 2.7e-104 382.5 260 75.4
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 4.5e-99 365.2 259 74.5
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 1.5e-97 360.1 260 73.5
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 1.4e-79 300.4 256 62.1
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.9e-73 280.0 185 79.5
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 8.3e-69 264.6 266 55.6
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 1.2e-48 197.6 246 43.9
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 6.0e-43 178.7 229 44.1
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 6.6e-42 175.3 245 41.2
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 5.6e-41 172.2 260 38.5
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 1.6e-40 170.6 241 43.6
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.2e-40 168.7 260 40.4
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.4e-39 167.5 246 41.9
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 3.1e-39 166.4 238 41.2
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 9.0e-39 164.9 234 41.0
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 9.0e-39 164.9 258 38.8
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.5e-38 164.1 250 40.0
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.0e-38 163.7 250 40.0
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.4e-38 162.9 235 39.6
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 3.4e-38 162.9 266 36.8
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 4.4e-38 162.5 233 39.5
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 9.9e-38 161.4 274 38.7
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 9.9e-38 161.4 237 39.2
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 9.9e-38 161.4 233 39.1
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.3e-37 161.0 271 37.3
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 1.7e-37 160.6 277 38.6
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 2.2e-37 160.2 230 40.9
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 4.9e-37 159.1 250 37.6
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 6.4e-37 158.7 249 39.0
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 1.1e-36 157.9 243 37.4
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 1.4e-36 157.5 262 38.5
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 1.4e-36 157.5 235 40.4
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 3.2e-36 156.4 220 44.1
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 4.2e-36 156.0 217 39.6
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 2.1e-35 153.7 237 40.1
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.7e-35 153.3 269 37.2
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 2.7e-35 153.3 237 41.8
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 3.5e-35 152.9 247 39.7
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 4.6e-35 152.5 269 37.2
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 4.6e-35 152.5 244 39.8
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.0e-34 151.4 288 35.4
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.7e-34 150.6 263 38.4
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 3.0e-34 149.8 237 39.2
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 1.5e-33 147.5 232 43.5
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 1.5e-33 147.5 272 35.3
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.9e-33 147.1 262 36.3
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 1.9e-33 147.1 243 37.0
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 4.3e-33 146.0 258 36.4
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 9.6e-33 144.8 261 37.9
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 9.6e-33 144.8 235 38.7
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.6e-32 144.1 260 34.6
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 2.1e-32 143.7 247 38.1
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 2.8e-32 143.3 268 37.3
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 4.8e-32 142.5 235 38.3
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 6.2e-32 142.1 228 35.1
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.2e-32 142.1 232 34.1
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 8.1e-32 141.7 224 35.7
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.1e-31 141.4 227 35.7
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 5.3e-31 139.0 240 37.1
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 6.9e-31 138.7 222 38.3
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 9.0e-31 138.3 227 32.6
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 3.4e-30 136.3 254 33.9
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.3e-29 134.4 167 40.1
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.2e-29 133.7 188 42.0
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.4e-28 130.2 262 34.0
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 5.4e-28 129.0 229 37.1
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.8e-26 124.0 260 33.8
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.5e-25 120.9 251 37.1
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 4.3e-25 119.4 233 35.6
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 2.1e-24 117.1 193 37.8
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.4e-23 114.4 195 37.4
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.5e-22 110.9 234 29.5
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 7.6e-22 108.6 185 37.3
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.3e-21 107.8 211 31.8
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 2.9e-21 106.7 267 30.3
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 2.9e-21 106.7 169 38.5
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 1.2e-19 101.3 181 32.0
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 7.9e-19 98.6 165 41.2
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 2.3e-18 97.1 225 30.2
BolC4t22040H Brassica oleracea HOM05D002705 ORTHO05D009765 1.4e-15 87.8 60 76.7
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 1.0e-13 81.6 171 32.7
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.6e-11 74.3 109 37.6
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 2.5e-09 67.0 132 35.6
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 4.8e-08 62.8 264 27.3
Glyma.20G130000 Glycine max HOM05D001524 ORTHO05D001392 6.3e-08 62.4 200 26.5
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 1.1e-07 61.6 207 27.1
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 2.4e-07 60.5 212 25.0
Nn3g18309 Nelumbo nucifera HOM05D001524 ORTHO05D001392 6.9e-07 58.9 192 25.5
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 6.9e-07 58.9 207 26.6
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 1.2e-06 58.2 223 24.7
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 1.5e-06 57.8 206 25.2


User provided reference genes

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