Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 5.0e-157 557.8 290 100.0
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 4.0e-138 495.0 290 89.3
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 4.9e-136 488.0 288 88.5
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 7.8e-134 480.7 288 85.4
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 1.1e-132 476.9 288 87.2
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 1.1e-132 476.9 288 87.2
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 5.3e-130 468.0 288 86.1
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 5.3e-130 468.0 288 86.1
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 5.3e-130 468.0 288 86.1
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 1.5e-129 466.5 289 84.8
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 5.8e-129 464.5 288 85.4
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 9.9e-129 463.8 287 84.3
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 5.1e-109 398.3 293 77.1
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 2.2e-91 339.7 295 66.1
BcaB06g28781 Brassica carinata HOM05D008587 ORTHO05D010485 3.6e-62 242.7 210 67.6
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 1.0e-40 171.4 213 49.3
BolC4t27854H Brassica oleracea HOM05D008587 ORTHO05D010485 3.3e-39 166.4 127 72.4
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 6.0e-33 145.6 240 40.4
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 6.2e-30 135.6 271 40.6
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 4.0e-29 132.9 256 39.8
Gorai.010G166500 Gossypium raimondii HOM05D008587 ORTHO05D010485 2.6e-28 130.2 258 39.9
Gohir.D06G142700 Gossypium hirsutum HOM05D008587 ORTHO05D010485 4.9e-27 125.9 258 39.1
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 3.2e-26 123.2 214 37.9
Gohir.A06G137500 Gossypium hirsutum HOM05D008587 ORTHO05D010485 2.7e-25 120.2 253 37.5
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 3.5e-25 119.8 231 39.8
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 8.6e-24 115.2 269 31.2
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 8.6e-24 115.2 205 36.6
TWI73G0974 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 1.6e-22 110.9 235 35.7
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 2.8e-22 110.2 236 37.3
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 3.6e-22 109.8 274 34.3
Duzib235G1124 Durio zibethinus HOM05D008587 ORTHO05D010485 1.1e-21 108.2 287 33.4
Haze_05596 Corylus avellana HOM05D008587 ORTHO05D010485 4.0e-21 106.3 214 38.3
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 8.9e-21 105.1 238 36.6
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 9.9e-20 101.7 221 31.7
Thecc.06G150600 Theobroma cacao HOM05D008587 ORTHO05D010485 1.3e-19 101.3 213 39.0
Cfa000945 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.7e-19 100.9 208 39.4
Haze_05597 Corylus avellana HOM05D008587 ORTHO05D010485 8.7e-16 88.6 238 33.2
Cfa000943 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.5e-15 87.8 146 38.4
RcHm_v2.0_Chr5g0014151 Rosa chinensis HOM05D014465 ORTHO05D010485 1.9e-15 87.4 212 34.9
FvH4_3g05550 Fragaria vesca HOM05D014465 ORTHO05D010485 2.5e-15 87.0 201 34.3
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 4.3e-15 86.3 268 29.1
CiPaw.09G123600 Carya illinoinensis HOM05D008587 ORTHO05D010485 9.6e-15 85.1 203 34.0
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.6e-14 84.3 266 28.9
COL.COLO4_31072 Corchorus olitorius HOM05D008587 ORTHO05D010485 2.8e-14 83.6 234 37.2
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 4.8e-14 82.8 116 42.2
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 1.2e-12 78.2 195 35.4
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 2.6e-12 77.0 159 34.6
BolC1t05877H Brassica oleracea HOM05D008587 ORTHO05D010485 2.2e-11 73.9 39 92.3
RcHm_v2.0_Chr5g0014161 Rosa chinensis HOM05D014465 ORTHO05D010485 2.2e-11 73.9 213 30.0
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 3.8e-11 73.2 116 34.5
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 3.5e-09 66.6 105 37.1
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 4.6e-09 66.2 105 39.0
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 4.6e-09 66.2 105 39.0
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.0e-08 65.1 94 43.6
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 1.8e-08 64.3 89 39.3
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 2.3e-08 63.9 91 36.3
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 2.3e-08 63.9 104 36.5
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 8.7e-08 62.0 111 37.8
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 1.5e-07 61.2 179 31.3
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 1.9e-07 60.8 144 31.9
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 1.9e-07 60.8 113 34.5
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 1.9e-07 60.8 117 37.6
MELO3C035710.2 Cucumis melo HOM05D030426 ORTHO05D029164 2.5e-07 60.5 128 32.0
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 2.5e-07 60.5 104 36.5
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 2.5e-07 60.5 108 37.0
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 2.5e-07 60.5 111 36.0
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 3.3e-07 60.1 120 36.7
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 4.3e-07 59.7 143 33.6
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 4.3e-07 59.7 141 32.6
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.3e-07 59.7 116 33.6
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 5.6e-07 59.3 64 42.2
CsaV3_1G032450 Cucumis sativus L. HOM05D030426 ORTHO05D029164 7.4e-07 58.9 109 35.8
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 7.4e-07 58.9 143 33.6
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 9.6e-07 58.5 147 32.0
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 1.3e-06 58.2 109 35.8
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 1.3e-06 58.2 101 33.7
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 1.6e-06 57.8 146 30.8
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 1.6e-06 57.8 135 34.1
FAN25G0862 Fragaria x ananassa HOM05D014465 ORTHO05D010485 2.1e-06 57.4 297 25.6
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 2.1e-06 57.4 107 36.4
FAN25G2871 Fragaria x ananassa HOM05D014465 ORTHO05D010485 2.1e-06 57.4 297 25.6
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 2.1e-06 57.4 143 32.9
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 2.8e-06 57.0 143 32.9
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.8e-06 57.0 60 45.0
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 3.7e-06 56.6 105 33.3
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 3.7e-06 56.6 122 38.5
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 4.8e-06 56.2 107 33.6
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 4.8e-06 56.2 116 31.9


User provided reference genes

Program Settings