Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10016892m.g Eutrema salsugineum HOM05D006978 ORTHO05D008723 2.2e-196 688.7 340 100.0
Sp4g17670 Schrenkiella parvula HOM05D006978 ORTHO05D008723 8.5e-180 633.6 340 91.2
CARHR129600 Cardamine hirsuta HOM05D006978 ORTHO05D008723 8.8e-177 623.6 339 89.7
AL4G31500 Arabidopsis lyrata HOM05D006978 ORTHO05D008723 1.3e-175 619.8 340 88.8
BcaC02g11649 Brassica carinata HOM05D006978 ORTHO05D008723 1.1e-174 616.7 340 88.5
BcaB02g09429 Brassica carinata HOM05D006978 ORTHO05D008723 4.1e-174 614.8 343 89.2
BraA05t19968Z Brassica rapa HOM05D006978 ORTHO05D008723 1.5e-173 612.8 341 88.3
C04p12730 Brassica napus HOM05D006978 ORTHO05D008723 7.7e-173 610.5 341 88.0
AT2G35450 Arabidopsis thaliana HOM05D006978 ORTHO05D008723 2.9e-172 608.6 343 88.0
BolC4t22921H Brassica oleracea HOM05D006978 ORTHO05D008723 2.5e-171 605.5 341 87.4
A05p10300 Brassica napus HOM05D006978 ORTHO05D008723 2.7e-170 602.1 341 87.1
Carub.0004s1713 Capsella rubella HOM05D006978 ORTHO05D008723 2.7e-170 602.1 344 86.3
Aa31LG9G13360 Aethionema arabicum HOM05D006978 ORTHO05D008723 1.9e-163 579.3 356 81.7
THA.LOC104814198 Tarenaya hassleriana HOM05D006978 ORTHO05D008723 1.1e-142 510.4 324 76.5
TAR371G0953 Trochodendron aralioides HOM05D006978 ORTHO05D008723 6.4e-135 484.6 334 71.3
TWI36G1146 Tripterygium wilfordii HOM05D006978 ORTHO05D008723 1.1e-134 483.8 288 77.8
Sabra03G0122900 Salix brachista HOM05D006978 ORTHO05D008723 3.2e-134 482.3 316 72.2
FvH4_4g23290 Fragaria vesca HOM05D006978 ORTHO05D008723 5.4e-134 481.5 338 70.4
FAN07G2913 Fragaria x ananassa HOM05D006978 ORTHO05D008723 7.0e-134 481.1 338 70.1
Duzib248G1034 Durio zibethinus HOM05D006978 ORTHO05D008723 1.6e-133 479.9 318 72.3
FAN17G0898 Fragaria x ananassa HOM05D006978 ORTHO05D008723 1.6e-133 479.9 338 69.8
FAN12G0972 Fragaria x ananassa HOM05D006978 ORTHO05D008723 3.5e-133 478.8 338 70.1
QL03p051315 Quercus lobata HOM05D006978 ORTHO05D008723 6.0e-133 478.0 316 71.5
Dinv11704 Davidia involucrata HOM05D006978 ORTHO05D008723 7.8e-133 477.6 302 74.2
Potri.003G167600 Populus trichocarpa HOM05D006978 ORTHO05D008723 7.8e-133 477.6 318 71.1
RcHm_v2.0_Chr4g0429651 Rosa chinensis HOM05D006978 ORTHO05D008723 1.0e-132 477.2 303 75.2
Gorai.005G194100 Gossypium raimondii HOM05D006978 ORTHO05D008723 8.6e-132 474.2 306 74.2
Hma1.2p1_0065F.1_g034960 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 1.1e-131 473.8 341 68.6
Gohir.A03G149500 Gossypium hirsutum HOM05D006978 ORTHO05D008723 2.5e-131 472.6 287 77.4
Prupe.1G221700 Prunus persica HOM05D006978 ORTHO05D008723 2.5e-131 472.6 303 73.6
Actinidia09621 Actinidia chinensis HOM05D006978 ORTHO05D008723 1.2e-130 470.3 291 74.9
Thecc.02G200200 Theobroma cacao HOM05D006978 ORTHO05D008723 1.2e-130 470.3 334 69.2
GSVIVG01000920001 Vitis vinifera HOM05D006978 ORTHO05D008723 1.6e-130 469.9 289 75.8
Sopen01g005540 Solanum pennellii HOM05D006978 ORTHO05D008723 2.8e-130 469.2 284 75.7
CSS0048975 Camellia sinensis var. sinensis HOM05D006978 ORTHO05D008723 3.6e-130 468.8 313 70.3
CiPaw.05G106100 Carya illinoinensis HOM05D006978 ORTHO05D008723 3.6e-130 468.8 342 68.7
Gohir.D02G172400 Gossypium hirsutum HOM05D006978 ORTHO05D008723 3.6e-130 468.8 306 73.5
Nn3g16378 Nelumbo nucifera HOM05D006978 ORTHO05D008723 3.6e-130 468.8 292 74.3
PSO478G2402 Papaver somniferum HOM05D006978 ORTHO05D008723 4.7e-130 468.4 287 76.0
Cfa009396 Carpinus fangiana HOM05D006978 ORTHO05D008723 6.2e-130 468.0 339 69.3
Ciclev10031990m.g Citrus clementina HOM05D006978 ORTHO05D008723 6.2e-130 468.0 307 73.3
Lj3A1073G42 Lonicera japonica HOM05D006978 ORTHO05D008723 6.2e-130 468.0 291 74.9
PGR102G2599 Punica granatum HOM05D006978 ORTHO05D008723 6.2e-130 468.0 335 69.0
PGSC0003DMG400005222 Solanum tuberosum HOM05D006978 ORTHO05D008723 6.2e-130 468.0 284 75.7
HanXRQChr08g0210001 Helianthus annuus HOM05D006978 ORTHO05D008723 1.8e-129 466.5 326 67.8
Solyc01g009970.3 Solanum lycopersicum HOM05D006978 ORTHO05D008723 1.2e-128 463.8 335 66.9
CAN.G373.1 Capsicum annuum HOM05D006978 ORTHO05D008723 2.0e-128 463.0 285 73.7
AUR62028894 Chenopodium quinoa HOM05D006978 ORTHO05D008723 2.0e-128 463.0 285 72.6
CsaV3_4G002940 Cucumis sativus L. HOM05D006978 ORTHO05D008723 2.6e-128 462.6 332 68.4
PSO017G5946 Papaver somniferum HOM05D006978 ORTHO05D008723 4.4e-128 461.8 287 74.2
Aqoxy5G03257 Aquilegia oxysepala HOM05D006978 ORTHO05D008723 7.5e-128 461.1 319 67.7
AUR62005659 Chenopodium quinoa HOM05D006978 ORTHO05D008723 1.3e-127 460.3 327 66.4
MELO3C017748.2 Cucumis melo HOM05D006978 ORTHO05D008723 1.7e-127 459.9 335 67.5
ECA233G0335 Erigeron canadensis HOM05D006978 ORTHO05D008723 1.1e-126 457.2 291 74.2
Nitab4.5_0004878g0040 Nicotiana tabacum HOM05D006978 ORTHO05D008723 1.4e-126 456.8 314 68.8
Lj1g0015384 Lotus japonicus HOM05D006978 ORTHO05D008723 1.9e-126 456.4 334 68.0
Nitab4.5_0001771g0130 Nicotiana tabacum HOM05D006978 ORTHO05D008723 2.4e-126 456.1 284 74.3
MD16G1123900 Malus domestica HOM05D006978 ORTHO05D008723 3.2e-126 455.7 342 67.3
Cc11_g17300 Coffea canephora HOM05D006978 ORTHO05D008723 7.1e-126 454.5 285 74.4
EL10Ac6g13545 Beta vulgaris HOM05D006978 ORTHO05D008723 1.6e-125 453.4 323 67.2
CANSAT01G1132 Cannabis sativa HOM05D006978 ORTHO05D008723 2.1e-125 453.0 296 70.6
Psat3g186920 Pisum sativum HOM05D006978 ORTHO05D008723 2.1e-125 453.0 307 68.7
ClCG07G015370 Citrullus lanatus HOM05D006978 ORTHO05D008723 2.7e-125 452.6 336 66.1
Migut.K01011 Erythranthe guttata HOM05D006978 ORTHO05D008723 4.6e-125 451.8 323 68.1
TPR.G2900 Trifolium pratense HOM05D006978 ORTHO05D008723 6.0e-125 451.4 292 71.6
arahy.Tifrunner.gnm1.ann1.2517Z7 Arachis hypogaea HOM05D006978 ORTHO05D008723 1.7e-124 449.9 297 69.7
arahy.Tifrunner.gnm1.ann1.HCE1UU Arachis hypogaea HOM05D006978 ORTHO05D008723 1.7e-124 449.9 297 69.7
VMungo1383G2882 Vigna mungo HOM05D000485 ORTHO05D000341 2.3e-124 449.5 285 73.7
Oeu011352.1 Olea europaea HOM05D006978 ORTHO05D008723 8.6e-124 447.6 288 73.6
Medtr7g022480 Medicago truncatula HOM05D006978 ORTHO05D008723 1.5e-123 446.8 320 66.9
Eucgr.B03530 Eucalyptus grandis HOM05D006978 ORTHO05D008723 1.9e-123 446.4 286 71.7
Ca_07142_v3 Cicer arietinum L. HOM05D006978 ORTHO05D008723 5.6e-123 444.9 298 69.8
Atru.BG.287.p Acer truncatum HOM05D006978 ORTHO05D008723 2.1e-122 443.0 269 75.8
Lalb_Chr10g0092011 Lupinus albus HOM05D006978 ORTHO05D008723 8.1e-122 441.0 282 72.7
DCAR_031207 Daucus carota HOM05D006978 ORTHO05D008723 2.3e-121 439.5 291 68.4
Os04g0391900 Oryza sativa ssp. japonica HOM05D006978 ORTHO05D008723 8.9e-121 437.6 284 69.0
Glyma.18G285000 Glycine max HOM05D006978 ORTHO05D008723 3.4e-120 435.6 286 68.5
Hund06110 Selenicereus undatus HOM05D006978 ORTHO05D008723 1.7e-116 423.3 295 68.8
SalBow2G2397 Salvia bowleyana HOM05D006978 ORTHO05D008723 4.3e-115 418.7 307 66.1
Sc11g0000330 Simmondsia chinensis HOM05D006978 ORTHO05D008723 4.3e-115 418.7 283 67.8
SEGI_15057 Sequoiadendron giganteum HOM05D006978 ORTHO05D008723 1.6e-114 416.8 311 63.7
Peaxi162Scf00255g00025 Petunia axillaris HOM05D006978 ORTHO05D008723 5.8e-112 408.3 248 75.0
Atru.chr11.2376 Acer truncatum HOM05D006978 ORTHO05D008723 2.2e-111 406.4 245 75.9
Mapoly0133s0049 Marchantia polymorpha HOM05D006978 ORTHO05D008723 2.9e-111 406.0 299 59.9
vmacro16091 Vaccinium macrocarpon HOM05D006978 ORTHO05D008723 6.4e-111 404.8 341 60.1
Sed0026660 Sechium edule HOM05D006978 ORTHO05D008723 9.3e-110 401.0 284 66.5
Pp3c1_20610 Physcomitrium patens HOM05D006978 ORTHO05D008723 4.8e-106 388.7 291 60.5
Glyma.18G284800 Glycine max HOM05D006978 ORTHO05D008723 1.8e-105 386.7 286 65.0
Haze_12456 Corylus avellana HOM05D006978 ORTHO05D008723 3.1e-105 386.0 290 67.2
ATR0582G006 Amborella trichopoda HOM05D006978 ORTHO05D008723 6.9e-105 384.8 244 71.7
Phvul.008G016700 Phaseolus vulgaris HOM05D006978 ORTHO05D008723 1.3e-103 380.6 244 73.0
Ah.02g130990 Amaranthus hybridus HOM05D006978 ORTHO05D008723 2.1e-101 373.2 300 60.7
SMO118G0021 Selaginella moellendorffii HOM05D006978 ORTHO05D008723 4.6e-101 372.1 287 58.5
CDE06G2364 Ceratophyllum demersum HOM05D006978 ORTHO05D008723 9.0e-97 357.8 281 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2371 Anthoceros agrestis HOM05D006978 ORTHO05D008723 2.2e-95 353.2 283 56.9
Manes.13G007900 Manihot esculenta HOM05D006978 ORTHO05D008723 1.6e-90 337.0 252 67.5
Zm00001eb421220 Zea mays HOM05D006978 ORTHO05D008723 5.5e-78 295.4 195 69.7
MCO09G507 Micromonas commoda HOM05D006978 ORTHO05D008723 5.7e-75 285.4 297 49.2
MSTRG.476 Avicennia marina HOM05D006978 ORTHO05D008723 1.7e-63 247.3 149 77.2
Cpa.g.sc99.56 Carica papaya HOM05D006978 ORTHO05D008723 2.4e-57 226.9 144 74.3
MBI11_g38268_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 9.1e-49 198.4 110 78.2
Glyma.02G096500 Glycine max HOM05D006978 ORTHO05D008723 5.5e-46 189.1 114 71.1
PRCOL_00001136 Prasinoderma coloniale HOM05D006978 ORTHO05D008723 6.3e-42 175.6 285 36.8
Hma1.2p1_0065F.1_g034970 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 1.1e-41 174.9 155 60.6
SalBow2G1646 Salvia bowleyana HOM05D006978 ORTHO05D008723 5.4e-41 172.6 105 78.1
MBI11_g38269_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 2.4e-33 147.1 108 62.0
Actinidia34017 Actinidia chinensis HOM05D006978 ORTHO05D008723 9.1e-33 145.2 155 51.0
arahy.Tifrunner.gnm1.ann1.5L80US Arachis hypogaea HOM05D006978 ORTHO05D008723 4.0e-28 129.8 85 71.8
Cpa.g.sc99.55 Carica papaya HOM05D006978 ORTHO05D008723 2.9e-26 123.6 140 48.6
Rhsim12G0096200 Rhododendron simsii HOM05D006978 ORTHO05D008723 1.4e-25 121.3 141 47.5
Peaxi162Scf00255g00026 Petunia axillaris HOM05D006978 ORTHO05D008723 4.4e-11 73.2 53 66.0
arahy.Tifrunner.gnm1.ann1.0RBU3Z Arachis hypogaea HOM05D006978 ORTHO05D008723 9.8e-11 72.0 55 54.5
MBI11_g31938_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 9.8e-11 72.0 49 63.3
RcHm_v2.0_Chr2g0135531 Rosa chinensis HOM05D006978 ORTHO05D008723 1.6e-08 64.7 40 70.0
MBI11_g31937_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 1.0e-07 62.0 42 66.7


User provided reference genes

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