Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 7.4e-220 766.9 393 100.0
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 2.5e-207 725.3 393 93.9
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 1.1e-202 709.9 393 92.1
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 1.5e-199 699.5 393 91.9
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 1.5e-199 699.5 393 92.4
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 2.5e-199 698.7 393 91.6
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 1.5e-196 689.5 393 90.1
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 6.3e-195 684.1 381 90.8
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 1.8e-194 682.6 395 89.9
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 2.4e-194 682.2 395 90.4
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 1.0e-192 676.8 394 89.1
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 3.3e-167 592.0 307 96.4
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 5.8e-164 581.3 393 79.6
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 7.6e-148 527.7 382 73.0
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 3.0e-136 489.2 339 72.6
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 5.1e-136 488.4 355 70.7
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.5e-135 486.1 339 72.3
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 3.3e-135 485.7 339 71.7
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 6.2e-134 481.5 319 75.5
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 1.2e-132 477.2 314 75.2
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 7.6e-132 474.6 388 64.7
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 7.6e-132 474.6 341 70.7
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 1.3e-131 473.8 383 64.8
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 4.9e-131 471.9 366 68.0
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 1.9e-130 469.9 326 72.1
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 2.4e-130 469.5 350 69.1
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 1.2e-129 467.2 320 70.6
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 3.5e-129 465.7 319 70.5
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.6e-129 465.3 329 68.7
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 6.0e-129 464.9 315 72.1
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 1.3e-128 463.8 341 69.5
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 2.3e-128 463.0 328 69.8
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 6.7e-128 461.5 320 69.7
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 8.7e-128 461.1 383 63.4
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 1.9e-127 459.9 318 72.6
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 1.9e-127 459.9 315 70.8
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.3e-127 459.1 304 72.4
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 4.3e-127 458.8 391 62.4
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.6e-127 458.4 320 69.1
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 7.4e-127 458.0 316 70.9
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 7.4e-127 458.0 316 70.9
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 7.4e-127 458.0 319 71.8
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 1.6e-126 456.8 306 71.9
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 6.2e-126 454.9 318 69.2
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 1.4e-125 453.8 319 69.0
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.2e-124 450.7 337 66.5
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 1.2e-124 450.7 322 67.4
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 1.2e-124 450.7 314 69.7
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.6e-124 449.5 355 63.7
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 5.8e-124 448.4 307 70.0
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 7.6e-124 448.0 369 61.8
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 2.2e-123 446.4 328 66.8
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 2.5e-122 443.0 313 69.6
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 5.5e-122 441.8 325 67.4
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 7.1e-122 441.4 314 68.5
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.6e-121 440.3 316 68.7
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 7.9e-121 438.0 368 61.4
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 7.9e-121 438.0 378 59.8
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 3.0e-120 436.0 383 57.2
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 3.9e-120 435.6 389 57.8
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 1.9e-119 433.3 385 57.7
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 3.3e-119 432.6 312 65.7
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 3.3e-119 432.6 334 65.9
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.3e-118 430.6 387 57.4
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 1.6e-118 430.3 309 69.3
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.6e-118 430.3 316 65.5
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 2.8e-118 429.5 298 70.5
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 6.3e-118 428.3 309 68.9
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 6.3e-118 428.3 322 65.8
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 1.8e-117 426.8 301 69.1
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 2.4e-117 426.4 318 64.2
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 4.1e-117 425.6 302 68.5
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 2.9e-115 419.5 388 55.4
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 7.9e-113 411.4 322 64.6
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 3.0e-112 409.5 301 65.4
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 3.9e-112 409.1 340 62.1
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 1.1e-111 407.5 381 56.4
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 4.3e-111 405.6 298 67.8
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 9.7e-111 404.4 309 64.7
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 6.9e-109 398.3 312 63.1
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 3.4e-108 396.0 388 54.4
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.9e-108 395.2 279 69.2
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 1.9e-106 390.2 312 64.1
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 3.2e-106 389.4 345 58.6
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 3.2e-106 389.4 288 66.0
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 8.8e-104 381.3 380 54.2
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 3.7e-102 375.9 290 64.5
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 4.8e-102 375.6 272 68.8
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 6.3e-102 375.2 339 55.8
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 1.1e-101 374.4 323 61.0
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 4.1e-101 372.5 312 59.6
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 5.0e-99 365.5 278 65.5
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 1.9e-98 363.6 329 58.7
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 1.8e-93 347.1 289 60.6
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 5.3e-93 345.5 277 62.1
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.2e-92 344.4 306 59.8
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 2.2e-91 340.1 225 72.4
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 2.9e-91 339.7 327 56.0
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 4.7e-89 332.4 299 55.2
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 1.8e-85 320.5 466 42.7
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 5.0e-83 312.4 305 50.5
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.8e-77 293.9 263 57.8
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 6.5e-75 285.4 304 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 4.7e-73 279.3 304 46.7
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 2.8e-70 270.0 392 38.3
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 1.1e-66 258.1 240 59.6
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 1.0e-64 251.5 178 74.2
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 7.5e-63 245.4 153 77.1
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 7.0e-61 238.8 199 61.3
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 1.6e-60 237.7 200 61.0
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 1.2e-57 228.0 169 73.4
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 2.7e-52 210.3 174 67.8
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 4.6e-52 209.5 176 66.5
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 6.2e-49 199.1 162 61.1
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.9e-42 177.6 251 43.4
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.8e-41 173.7 134 62.7
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 4.4e-39 166.4 141 57.4
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 2.1e-33 147.5 179 48.0
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 9.9e-31 138.7 112 63.4
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 8.4e-30 135.6 203 34.0
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.3e-27 127.5 86 74.4
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 3.9e-27 126.7 126 54.8
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 1.5e-23 114.8 198 33.3
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 1.9e-18 97.8 99 61.6
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 2.1e-17 94.4 46 89.1
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 2.1e-17 94.4 46 89.1
BcaC02g07709 Brassica carinata HOM05D006137 ORTHO05D007697 1.2e-15 88.6 92 64.1
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 2.1e-09 67.8 204 26.0
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 6.2e-09 66.2 31 90.3
Mapoly0035s0139 Marchantia polymorpha HOM05D002058 ORTHO05D003758 6.9e-08 62.8 149 33.6
MCO12G135 Micromonas commoda HOM05D002058 ORTHO05D003758 1.2e-07 62.0 170 26.5
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 2.6e-07 60.8 167 29.9
SEGI_36463 Sequoiadendron giganteum HOM05D002058 ORTHO05D009216 5.8e-07 59.7 119 34.5
CBR_g50831 Chara braunii HOM05D001789 ORTHO05D001755 2.9e-06 57.4 89 40.4


User provided reference genes

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