Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 3.9e-96 354.8 174 100.0
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 3.8e-83 311.6 167 92.2
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.3e-80 303.1 167 89.2
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.8e-80 302.8 167 89.8
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 3.0e-80 302.0 167 89.2
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 3.9e-80 301.6 167 89.8
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 3.9e-80 301.6 167 89.8
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 5.1e-80 301.2 167 88.6
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 6.7e-80 300.8 167 89.8
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 8.7e-80 300.4 167 87.4
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.1e-79 300.1 167 88.0
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 1.1e-79 300.1 167 89.2
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 5.8e-76 287.7 167 83.8
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.1e-74 283.5 167 80.8
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 2.5e-74 282.3 167 82.6
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 4.2e-74 281.6 167 79.6
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 4.2e-74 281.6 167 80.2
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 7.1e-74 280.8 167 80.2
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 9.3e-74 280.4 190 76.3
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.2e-73 280.0 167 79.6
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 4.6e-73 278.1 160 83.1
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 7.9e-73 277.3 167 78.4
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 7.9e-73 277.3 167 79.6
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.8e-72 276.2 167 77.2
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 2.3e-72 275.8 173 75.1
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 5.1e-72 274.6 167 77.2
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 6.7e-72 274.2 167 77.2
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 8.7e-72 273.9 167 77.8
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 1.5e-71 273.1 167 78.4
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 1.9e-71 272.7 167 76.6
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.9e-71 272.7 167 76.0
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 1.9e-71 272.7 167 76.6
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.9e-71 272.7 167 76.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.9e-71 272.7 167 76.0
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 2.5e-71 272.3 167 76.6
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 2.5e-71 272.3 166 77.1
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 3.3e-71 271.9 167 79.6
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 3.3e-71 271.9 167 77.8
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.3e-71 271.9 167 75.4
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 4.3e-71 271.6 167 76.6
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 9.7e-71 270.4 167 76.0
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 9.7e-71 270.4 167 76.0
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 9.7e-71 270.4 167 77.8
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 9.7e-71 270.4 167 75.4
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.6e-70 269.6 167 77.2
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.8e-70 268.9 167 76.0
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 4.8e-70 268.1 159 78.6
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 4.8e-70 268.1 167 77.2
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.8e-70 268.1 167 77.2
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.8e-70 268.1 167 77.2
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 8.2e-70 267.3 167 73.7
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.1e-69 266.9 156 79.5
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 1.4e-69 266.5 167 74.9
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 1.8e-69 266.2 167 75.4
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 1.8e-69 266.2 167 75.4
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 2.4e-69 265.8 167 74.9
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.4e-69 265.8 167 74.3
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.4e-69 265.8 156 78.8
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 3.1e-69 265.4 167 75.4
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 3.1e-69 265.4 162 76.5
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 4.1e-69 265.0 167 74.3
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 4.1e-69 265.0 167 74.3
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 5.3e-69 264.6 167 73.7
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 5.3e-69 264.6 167 74.9
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 6.9e-69 264.2 167 74.3
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 6.9e-69 264.2 172 75.6
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 9.0e-69 263.8 168 76.8
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.5e-68 263.1 160 75.0
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.5e-68 263.1 167 73.1
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 2.0e-68 262.7 160 75.6
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.0e-68 262.7 160 78.8
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 2.6e-68 262.3 161 75.2
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 3.4e-68 261.9 167 73.7
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 3.4e-68 261.9 167 73.1
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.0e-67 260.4 167 72.5
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.3e-67 260.0 167 71.3
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 2.2e-67 259.2 167 73.1
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.5e-67 257.3 160 75.0
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.9e-66 256.1 167 71.9
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 2.5e-66 255.8 156 75.0
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.5e-66 255.8 168 72.0
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 4.2e-66 255.0 167 72.5
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 7.2e-66 254.2 167 70.7
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 6.1e-65 251.1 160 72.5
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 5.1e-64 248.1 167 69.5
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 6.7e-64 247.7 159 71.7
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 3.3e-63 245.4 162 69.1
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 2.2e-62 242.7 167 67.1
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 4.8e-62 241.5 167 68.3
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 4.1e-61 238.4 167 67.1
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 7.7e-60 234.2 167 67.1
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.8e-56 223.0 167 65.9
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.5e-55 219.9 165 62.4
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 9.7e-55 217.2 165 60.0
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.5e-52 209.9 140 70.0
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.7e-51 206.5 126 75.4
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.5e-50 202.6 164 59.1
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 2.5e-50 202.6 126 73.0
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 3.2e-50 202.2 173 60.7
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.4e-48 196.8 140 70.0
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 2.0e-47 193.0 121 72.7
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 4.1e-45 185.3 117 67.5
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.1e-42 177.2 130 62.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.0e-40 169.1 101 73.3
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-39 165.2 185 49.7
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-39 165.2 185 49.7
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 9.7e-39 164.1 164 46.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 3.1e-37 159.1 96 74.0
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 1.5e-34 150.2 91 76.9
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 4.2e-34 148.7 113 65.5
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 7.5e-31 137.9 163 41.1
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 1.3e-30 137.1 116 55.2
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 2.0e-28 129.8 165 39.4
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 8.6e-27 124.4 79 82.3
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 8.6e-27 124.4 90 64.4
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.9e-26 123.2 171 40.4
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.6e-25 120.2 80 66.2
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 1.5e-23 113.6 80 78.8
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.4e-21 106.3 65 73.8
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 6.6e-19 98.2 56 91.1
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.0e-16 89.4 61 67.2
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 4.0e-16 89.0 56 76.8
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.3e-14 84.0 50 74.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.6e-12 77.0 46 73.9
Cfa024503 Carpinus fangiana HOM05D006675 ORTHO05D008302 4.9e-06 55.5 166 22.3
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 4.9e-06 55.5 33 72.7


User provided reference genes

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