Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.1e-105 386.7 200 100.0
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-64 250.4 206 67.5
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.2e-63 246.1 205 66.8
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-62 243.8 205 66.3
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 7.2e-62 241.1 208 65.9
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 7.2e-62 241.1 208 65.9
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 6.7e-60 234.6 188 67.0
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 2.0e-59 233.0 192 66.1
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 5.7e-59 231.5 183 67.8
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 2.2e-55 219.5 189 62.4
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.9e-54 216.5 206 57.3
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.2e-54 215.3 203 59.1
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.1e-53 213.0 171 62.6
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 4.7e-53 211.8 217 56.7
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 6.1e-53 211.5 171 62.6
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 6.1e-53 211.5 171 62.6
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.0e-52 210.7 171 62.6
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.4e-52 210.3 170 63.5
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-52 209.5 171 62.0
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 4.0e-52 208.8 160 64.4
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 6.8e-52 208.0 171 62.0
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 6.8e-52 208.0 171 61.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 7.5e-51 204.5 171 60.2
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.8e-50 202.6 171 60.2
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.3e-44 183.0 167 56.3
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.0e-44 182.6 213 48.4
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 5.2e-44 181.8 167 55.7
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 5.2e-44 181.8 197 50.3
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.6e-43 179.5 202 49.0
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 4.4e-43 178.7 196 49.5
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 9.8e-43 177.6 171 53.8
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.3e-42 177.2 210 48.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.3e-42 177.2 209 47.4
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 2.8e-42 176.0 205 45.9
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 2.8e-42 176.0 209 48.8
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.8e-42 176.0 210 48.6
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 3.7e-42 175.6 173 50.9
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.9e-42 175.3 169 52.7
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 4.9e-42 175.3 192 50.5
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 6.3e-42 174.9 195 48.7
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.4e-41 173.7 171 52.6
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 2.4e-41 172.9 196 44.9
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 3.1e-41 172.6 169 50.3
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.1e-41 172.6 171 50.3
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 4.1e-41 172.2 193 47.7
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 5.4e-41 171.8 192 47.9
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 7.0e-41 171.4 200 49.5
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.2e-40 170.6 187 51.3
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.2e-40 170.6 193 47.2
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.6e-40 170.2 175 52.0
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.7e-40 169.5 211 45.5
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 2.7e-40 169.5 207 48.3
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 3.5e-40 169.1 208 46.6
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 5.9e-40 168.3 210 48.6
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 5.9e-40 168.3 196 48.0
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 7.8e-40 167.9 173 52.0
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 7.8e-40 167.9 206 45.6
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.0e-39 167.5 195 46.2
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.0e-39 167.5 169 50.3
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.3e-39 167.2 171 49.7
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.3e-39 167.2 170 51.8
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.7e-39 166.8 208 45.7
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 1.7e-39 166.8 196 48.5
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 1.7e-39 166.8 197 48.7
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.7e-39 166.8 169 50.3
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.3e-39 166.4 175 50.9
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.9e-39 166.0 169 49.7
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 3.8e-39 165.6 196 46.9
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 8.6e-39 164.5 208 47.1
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.1e-38 164.1 211 46.0
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.1e-38 164.1 159 52.8
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 2.5e-38 162.9 167 51.5
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 3.3e-38 162.5 163 53.4
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 4.3e-38 162.2 206 45.6
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 5.6e-38 161.8 211 46.0
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 9.5e-38 161.0 202 48.5
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.6e-37 160.2 191 45.5
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.6e-37 160.2 168 47.6
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 2.8e-37 159.5 189 47.6
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 2.8e-37 159.5 172 51.7
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 3.6e-37 159.1 161 51.6
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 8.0e-37 157.9 204 46.6
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.8e-36 156.8 206 46.6
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 6.8e-36 154.8 162 48.1
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 6.8e-36 154.8 211 43.1
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.4e-35 152.5 160 46.2
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 3.4e-35 152.5 202 43.6
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 7.5e-35 151.4 169 46.2
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 9.8e-35 151.0 155 47.7
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.3e-34 150.6 145 51.7
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.4e-33 146.4 141 55.3
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 3.2e-33 146.0 174 45.4
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 9.2e-33 144.4 171 43.9
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.2e-32 144.1 171 43.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.0e-32 143.3 171 43.9
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.8e-32 141.4 198 39.9
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.7e-31 140.2 205 38.5
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 3.3e-30 136.0 176 44.3
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 1.2e-29 134.0 194 42.3
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.6e-29 133.7 198 42.9
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 4.7e-29 132.1 187 40.6
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 4.7e-29 132.1 204 42.2
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 8.0e-29 131.3 211 40.8
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 8.0e-29 131.3 277 32.5
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 3.4e-27 125.9 117 53.0
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 5.8e-27 125.2 184 41.8
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.9e-26 122.9 160 41.9
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 3.5e-24 115.9 85 60.0
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.3e-23 114.0 209 39.7
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.5e-22 109.8 157 38.9
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.6e-21 107.1 147 36.7
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 9.9e-19 97.8 159 35.8
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 7.1e-17 91.7 86 47.7
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.3e-14 82.4 166 37.3
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 5.6e-14 82.0 85 58.8
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.8e-13 79.7 118 46.6
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.7e-13 79.0 84 57.1
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.1e-12 77.8 153 30.1
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 6.8e-12 75.1 68 47.1
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.5e-11 73.9 163 31.3
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 7.6e-11 71.6 160 32.5
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-10 70.5 93 48.4
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.1e-09 67.8 116 39.7
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.1e-09 67.8 145 39.3
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 7.1e-09 65.1 167 32.3
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 4.6e-08 62.4 174 28.7
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-07 61.2 127 33.1
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.0e-07 61.2 127 33.1
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.0e-07 61.2 88 42.0
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 8.7e-07 58.2 127 32.3
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.9e-06 57.0 127 31.5
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.9e-06 57.0 127 31.5
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 3.3e-06 56.2 77 39.0


User provided reference genes

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