Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.5e-107 392.9 199 100.0
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.8e-60 236.5 150 78.7
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.3e-59 232.3 152 78.9
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 9.7e-59 230.7 152 76.3
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.6e-56 222.6 154 77.3
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.6e-56 222.6 152 75.0
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 7.2e-54 214.5 154 74.7
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.6e-51 206.1 151 72.8
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 3.3e-51 205.7 156 73.7
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 3.3e-51 205.7 156 73.7
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 9.7e-51 204.1 156 73.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 9.7e-51 204.1 156 73.1
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.8e-50 202.6 152 70.4
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 3.7e-50 202.2 156 72.4
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.0e-47 194.1 113 87.6
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.0e-36 157.5 156 60.3
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.0e-36 157.5 156 60.3
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.4e-35 152.1 154 57.8
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 7.5e-35 151.4 151 53.6
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.8e-34 148.7 154 55.2
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.1e-33 147.5 155 57.4
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.4e-33 147.1 152 57.2
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.8e-33 146.7 155 54.2
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.8e-33 146.7 157 58.0
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.8e-33 146.7 154 55.8
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.2e-32 144.1 154 56.5
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.2e-32 144.1 157 56.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.6e-32 143.7 150 55.3
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 2.7e-32 142.9 151 57.6
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 3.5e-32 142.5 151 56.3
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.5e-32 142.5 152 54.6
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 4.5e-32 142.1 154 53.9
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 5.9e-32 141.7 152 55.9
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 5.9e-32 141.7 154 52.6
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.7e-32 141.4 152 54.6
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.7e-32 141.4 152 54.6
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.0e-31 141.0 154 53.9
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.0e-31 141.0 153 52.9
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.0e-31 141.0 152 55.9
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.0e-31 141.0 154 51.9
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.0e-31 141.0 155 52.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.3e-31 140.6 152 53.9
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.7e-31 140.2 155 53.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.2e-31 139.8 154 57.1
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 2.2e-31 139.8 154 53.9
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 2.2e-31 139.8 151 56.3
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 3.8e-31 139.0 146 52.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 5.0e-31 138.7 154 52.6
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 5.0e-31 138.7 152 53.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.5e-31 138.3 167 51.5
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 6.5e-31 138.3 154 53.2
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 6.5e-31 138.3 155 54.8
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 8.5e-31 137.9 151 57.6
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 8.5e-31 137.9 155 52.3
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 8.5e-31 137.9 154 51.3
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-30 137.5 152 53.9
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 1.1e-30 137.5 154 51.3
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 4.2e-30 135.6 160 48.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.5e-30 134.4 112 62.5
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 9.5e-30 134.4 153 50.3
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 9.5e-30 134.4 153 52.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.2e-29 134.0 161 49.7
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.2e-29 134.0 152 51.3
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 2.1e-29 133.3 151 55.0
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 3.6e-29 132.5 168 51.2
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 4.7e-29 132.1 160 54.4
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 6.1e-29 131.7 136 58.1
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.8e-28 130.2 153 52.9
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 2.3e-28 129.8 152 51.3
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 3.0e-28 129.4 154 45.5
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 3.0e-28 129.4 151 53.0
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 4.0e-28 129.0 166 50.0
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.8e-28 128.3 152 52.0
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 6.8e-28 128.3 152 51.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 6.8e-28 128.3 156 50.0
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 8.8e-28 127.9 154 52.6
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-27 127.5 175 48.0
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.2e-27 127.5 152 51.3
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.5e-27 127.1 90 72.2
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 2.0e-27 126.7 153 51.6
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 2.0e-27 126.7 169 49.1
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.4e-27 125.6 129 51.9
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 5.7e-27 125.2 89 69.7
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 5.7e-27 125.2 169 49.1
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 7.5e-27 124.8 145 53.1
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.8e-27 124.4 150 52.0
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 9.8e-27 124.4 137 53.3
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-26 124.0 104 62.5
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.8e-26 122.9 137 50.4
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 4.9e-26 122.1 86 69.8
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 4.9e-26 122.1 148 50.0
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 4.9e-26 122.1 146 50.7
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 6.3e-26 121.7 153 50.3
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.3e-26 121.3 153 45.8
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 8.3e-26 121.3 169 47.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.1e-25 120.9 157 50.3
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.1e-25 120.9 154 50.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.8e-25 120.2 159 47.2
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 3.1e-25 119.4 117 63.2
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 9.2e-25 117.9 154 50.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.6e-24 117.1 75 73.3
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.7e-24 116.3 153 49.0
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.0e-23 114.4 132 54.5
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.3e-23 113.2 72 73.6
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.9e-23 112.8 163 44.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 5.0e-23 112.1 153 48.4
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 8.6e-23 111.3 79 63.3
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 2.5e-22 109.8 89 65.2
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.2e-21 107.5 73 69.9
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.1e-21 106.7 152 44.7
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.1e-21 105.1 94 61.7
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.1e-21 105.1 94 61.7
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.3e-20 103.2 83 61.4
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.0e-20 102.8 73 65.8
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.2e-19 100.9 111 52.3
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.6e-19 99.8 171 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 3.4e-19 99.4 130 43.1
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.4e-19 99.4 171 40.9
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 7.5e-19 98.2 97 57.7
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.2e-18 96.7 150 42.7
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 2.2e-18 96.7 147 44.2
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 2.9e-18 96.3 87 56.3
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.8e-17 93.6 134 44.8
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.8e-17 93.6 161 42.2
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 4.1e-17 92.4 151 45.0
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-16 89.7 106 48.1
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.6e-15 84.7 150 40.0
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.3e-10 70.9 69 46.4
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.7e-10 70.5 43 74.4
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 6.0e-08 62.0 76 47.4
CARHR209440 Cardamine hirsuta HOM05D005212 ORTHO05D006353 5.0e-07 58.9 37 75.7
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 3.3e-06 56.2 116 39.7
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 4.3e-06 55.8 33 78.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 5.6e-06 55.5 37 62.2
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 9.5e-06 54.7 73 42.5


User provided reference genes

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