Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.6e-36 155.6 78 100.0
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 6.8e-32 140.2 78 87.2
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 4.5e-28 127.5 78 79.5
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 7.7e-28 126.7 78 79.5
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 3.8e-27 124.4 78 78.2
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 3.8e-27 124.4 78 78.2
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 3.8e-27 124.4 78 78.2
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 3.8e-27 124.4 78 78.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 80.3
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 2.5e-26 121.7 76 77.6
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 5.5e-26 120.6 76 76.3
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.6e-25 119.0 76 75.0
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.7e-25 118.2 76 73.7
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 3.6e-25 117.9 76 73.7
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 3.6e-25 117.9 75 74.7
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.6e-25 117.9 76 76.3
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 8.0e-25 116.7 76 73.7
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.0e-24 116.3 76 72.4
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.4e-24 115.9 75 74.7
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.4e-24 115.9 76 73.7
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.8e-24 115.5 76 72.4
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.3e-24 115.2 76 72.4
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 76 69.7
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 6.8e-24 113.6 76 71.1
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 6.8e-24 113.6 78 67.9
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 8.8e-24 113.2 76 72.4
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 8.8e-24 113.2 76 71.1
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 8.8e-24 113.2 76 69.7
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.2e-23 112.8 76 71.1
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.2e-23 112.8 77 75.3
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.2e-23 112.8 76 71.1
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.5e-23 112.5 76 71.1
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.5e-23 112.5 76 73.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 69.7
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 71.1
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 68.4
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 71.1
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.6e-23 111.7 76 68.4
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.6e-23 111.7 77 70.1
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.6e-23 111.7 76 71.1
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 76 71.1
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 3.4e-23 111.3 76 69.7
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 4.4e-23 110.9 78 67.9
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.4e-23 110.9 76 65.8
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 4.4e-23 110.9 76 65.8
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.4e-23 110.9 76 69.7
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 5.7e-23 110.5 76 69.7
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 7.5e-23 110.2 76 67.1
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 7.5e-23 110.2 76 65.8
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 7.5e-23 110.2 76 67.1
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 7.5e-23 110.2 76 67.1
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 9.8e-23 109.8 76 68.4
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.8e-23 109.8 76 64.5
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 67.1
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.3e-22 109.4 75 69.3
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 71.1
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.7e-22 109.0 76 67.1
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 67.1
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 69.7
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 68.4
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 68.4
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 2.8e-22 108.2 77 67.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 2.8e-22 108.2 77 67.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 2.8e-22 108.2 77 67.5
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 2.8e-22 108.2 78 66.7
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.8e-22 108.2 75 66.7
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 3.7e-22 107.8 76 63.2
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.7e-22 107.8 70 72.9
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.7e-22 107.8 70 72.9
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 4.9e-22 107.5 77 66.2
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 4.9e-22 107.5 76 67.1
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.9e-22 107.5 63 79.4
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 6.3e-22 107.1 77 66.2
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 6.3e-22 107.1 76 64.5
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 6.3e-22 107.1 76 67.1
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.3e-22 107.1 76 65.8
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 6.3e-22 107.1 77 71.4
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 6.3e-22 107.1 77 71.4
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 8.3e-22 106.7 76 65.8
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 8.3e-22 106.7 76 65.8
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 8.3e-22 106.7 76 67.1
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-21 105.9 75 62.7
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.8e-21 105.5 77 64.9
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.8e-21 105.5 76 65.8
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 2.4e-21 105.1 76 65.8
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.4e-21 105.1 76 71.1
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.1e-21 104.8 76 65.8
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 9.1e-21 103.2 75 65.3
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 9.1e-21 103.2 76 63.2
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 9.1e-21 103.2 66 71.2
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.2e-20 102.8 76 64.5
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.6e-20 102.4 75 62.7
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.0e-20 102.1 76 64.5
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.7e-20 101.7 60 78.3
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 3.5e-20 101.3 76 63.2
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 3.5e-20 101.3 76 63.2
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 4.5e-20 100.9 76 65.8
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 4.5e-20 100.9 76 60.5
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 4.5e-20 100.9 76 60.5
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.9e-20 100.5 83 60.2
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.7e-20 100.1 60 76.7
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 7.7e-20 100.1 70 65.7
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 7.7e-20 100.1 70 65.7
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.8e-19 97.8 78 60.3
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.8e-19 97.8 63 69.8
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 6.6e-19 97.1 76 59.2
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 8.6e-19 96.7 76 61.8
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 8.6e-19 96.7 71 63.4
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.5e-18 95.9 76 59.2
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.5e-18 95.9 60 73.3
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.5e-18 95.9 62 74.2
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.5e-18 95.9 72 59.7
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.9e-18 95.5 71 64.8
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 3.3e-18 94.7 62 69.4
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 4.2e-18 94.4 76 57.9
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.5e-18 94.0 74 56.8
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 5.5e-18 94.0 76 57.9
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 7.2e-18 93.6 56 78.6
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 9.5e-18 93.2 62 71.0
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 9.5e-18 93.2 62 69.4
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.1e-17 92.0 76 53.9
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.8e-17 91.7 76 53.9
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 6.1e-17 90.5 57 71.9
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.8e-16 89.0 54 75.9
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.3e-16 88.6 64 62.5
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 3.0e-16 88.2 55 70.9
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 4.0e-16 87.8 63 65.1
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 5.2e-16 87.4 61 67.2
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.2e-15 86.3 76 52.6
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.5e-15 85.9 73 56.2
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.5e-15 85.9 63 60.3
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.6e-15 85.1 76 52.6
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.2e-14 82.0 76 51.3
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.9e-14 81.6 76 51.3
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.9e-14 81.6 74 50.0
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.1e-13 79.7 49 71.4
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.4e-13 79.3 76 46.1
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 2.4e-13 78.6 59 57.6
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.1e-13 77.8 67 55.2
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.1e-10 69.7 68 47.1
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.1e-10 69.7 59 50.8
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.5e-10 68.6 70 47.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.8e-09 65.1 73 43.8
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 6.8e-08 60.5 51 62.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 4.4e-07 57.8 76 35.5


User provided reference genes

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