Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.3e-38 161.8 82 100.0
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 4.5e-26 120.9 79 79.7
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 2.9e-25 118.2 79 81.0
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 4.9e-25 117.5 79 82.3
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 4.9e-25 117.5 79 82.3
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 6.4e-25 117.1 79 83.5
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 2.4e-24 115.2 79 81.0
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 7.9e-23 110.2 83 77.1
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 1.9e-21 105.5 81 72.8
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 4.0e-19 97.8 81 70.4
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 1.5e-18 95.9 65 76.9
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 1.7e-17 92.4 66 72.7
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 1.7e-17 92.4 66 72.7
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 2.9e-17 91.7 73 71.2
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 8.4e-17 90.1 76 69.7
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 1.3e-14 82.8 86 60.5
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 1.3e-14 82.8 86 60.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.8e-12 75.1 53 69.8
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.8e-12 75.1 50 78.0
CARHR211400 Cardamine hirsuta HOM05D004288 ORTHO05D004997 1.5e-10 69.3 67 59.7
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.5e-10 69.3 52 67.3
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.4e-10 68.2 52 61.5
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 4.5e-10 67.8 58 63.8
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.8e-10 67.4 50 68.0
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.8e-10 67.4 50 68.0
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 5.8e-10 67.4 50 68.0
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 5.8e-10 67.4 57 59.6
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.0e-09 66.6 51 68.6
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.0e-09 66.6 51 68.6
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-09 66.2 53 60.4
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.3e-09 66.2 56 60.7
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.3e-09 66.2 46 71.7
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.3e-09 66.2 51 66.7
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.7e-09 65.9 53 62.3
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.7e-09 65.9 48 68.8
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 3.8e-09 64.7 52 63.5
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 5.0e-09 64.3 45 62.2
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 5.0e-09 64.3 56 60.7
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 6.5e-09 63.9 53 62.3
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.5e-09 63.9 58 56.9
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 6.5e-09 63.9 47 66.0
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 6.5e-09 63.9 48 62.5
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 8.4e-09 63.5 53 62.3
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 8.4e-09 63.5 55 60.0
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 8.4e-09 63.5 53 54.7
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 8.4e-09 63.5 53 62.3
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.1e-08 63.2 48 60.4
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.1e-08 63.2 48 60.4
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.1e-08 63.2 53 62.3
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.4e-08 62.8 61 57.4
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.4e-08 62.8 49 63.3
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.4e-08 62.8 49 63.3
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.4e-08 62.8 49 63.3
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.4e-08 62.8 56 57.1
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.4e-08 62.8 56 57.1
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.4e-08 62.8 46 65.2
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.9e-08 62.4 53 60.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.5e-08 62.0 50 62.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.5e-08 62.0 53 60.4
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.5e-08 62.0 53 60.4
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.5e-08 62.0 55 56.4
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.5e-08 62.0 44 63.6
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.2e-08 61.6 60 55.0
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 3.2e-08 61.6 57 54.4
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 3.2e-08 61.6 57 54.4
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.2e-08 61.2 49 63.3
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 4.2e-08 61.2 45 64.4
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 5.5e-08 60.8 50 64.0
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 5.5e-08 60.8 52 61.5
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 7.1e-08 60.5 56 57.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.1e-08 60.5 57 57.9
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 7.1e-08 60.5 57 56.1
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 9.3e-08 60.1 53 58.5
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 9.3e-08 60.1 42 64.3
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 9.3e-08 60.1 50 60.0
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 9.3e-08 60.1 53 58.5
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 1.2e-07 59.7 53 60.4
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.2e-07 59.7 49 59.2
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.2e-07 59.7 52 59.6
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.6e-07 59.3 53 58.5
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.6e-07 59.3 49 61.2
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.6e-07 59.3 47 61.7
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 2.1e-07 58.9 47 59.6
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 2.1e-07 58.9 46 60.9
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.1e-07 58.9 53 62.3
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.7e-07 58.5 64 50.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.7e-07 58.5 45 64.4
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 3.5e-07 58.2 38 65.8
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.5e-07 58.2 53 58.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 4.6e-07 57.8 53 58.5
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.6e-07 57.8 45 62.2
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 4.6e-07 57.8 48 54.2
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 6.1e-07 57.4 64 48.4
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 6.1e-07 57.4 47 57.4
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 6.1e-07 57.4 45 57.8
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.1e-07 57.4 42 61.9
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 6.1e-07 57.4 46 60.9
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 7.9e-07 57.0 49 61.2
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 7.9e-07 57.0 52 55.8
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.9e-07 57.0 53 58.5
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.3e-06 56.2 51 54.9
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.8e-06 55.8 55 56.4
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 1.8e-06 55.8 49 57.1
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.8e-06 55.8 59 50.8
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 2.3e-06 55.5 55 52.7
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.3e-06 55.5 44 65.9
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.3e-06 55.5 48 58.3
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 2.3e-06 55.5 46 60.9
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.0e-06 55.1 44 63.6
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.9e-06 54.7 53 52.8
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.9e-06 54.7 48 58.3
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.1e-06 54.3 55 54.5
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 5.1e-06 54.3 48 56.2
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.1e-06 54.3 53 54.7
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 6.7e-06 53.9 45 53.3
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 6.7e-06 53.9 50 62.0
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 6.7e-06 53.9 57 49.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 8.7e-06 53.5 49 59.2


User provided reference genes

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