Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.2e-41 170.2 92 100.0
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.7e-37 157.9 92 91.3
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.9e-34 148.3 83 95.2
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 5.0e-34 147.5 83 95.2
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 5.0e-34 147.5 83 95.2
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.1e-33 146.4 83 94.0
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.1e-33 146.4 83 94.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.9e-33 145.6 83 94.0
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.9e-33 145.6 83 94.0
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.9e-33 145.6 83 94.0
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 2.5e-33 145.2 83 92.8
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 2.5e-33 145.2 83 94.0
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 2.5e-33 145.2 83 91.6
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 7.2e-33 143.7 83 92.8
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 3.6e-32 141.4 83 88.0
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 6.1e-32 140.6 83 91.6
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 6.1e-32 140.6 83 91.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 7.0e-28 127.1 83 83.1
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.0e-26 123.2 92 75.0
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 8.5e-26 120.2 92 72.8
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.5e-25 119.4 83 80.7
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.6e-24 115.9 92 71.7
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.5e-22 109.4 83 72.3
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 66.0
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.4e-22 108.2 93 68.8
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 4.4e-22 107.8 83 77.1
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 5.7e-22 107.5 83 72.3
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.5e-22 107.1 83 75.9
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.3e-21 106.3 93 66.7
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.2e-21 105.5 83 68.7
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.2e-21 105.5 83 71.1
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 3.7e-21 104.8 83 69.9
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 3.7e-21 104.8 92 63.0
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 1.1e-20 103.2 92 64.1
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.1e-20 103.2 83 68.7
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.1e-20 103.2 83 68.7
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.1e-20 103.2 83 69.9
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 3.1e-20 101.7 83 68.7
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 5.4e-20 100.9 92 63.0
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 5.4e-20 100.9 92 63.0
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 1.2e-19 99.8 92 62.0
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.2e-19 99.8 93 65.6
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.6e-19 99.4 95 65.3
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 5.9e-19 97.4 83 66.3
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.0e-18 96.7 93 61.3
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.8e-18 94.7 90 61.1
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 5.0e-18 94.4 92 62.0
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 5.0e-18 94.4 83 63.9
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.1e-17 93.2 83 65.1
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 1.5e-17 92.8 83 66.3
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 1.9e-17 92.4 83 65.1
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.5e-17 92.0 83 63.9
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.5e-17 92.0 83 63.9
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.2e-17 91.7 83 61.4
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.2e-17 91.7 83 61.4
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.2e-17 91.7 90 62.2
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 4.2e-17 91.3 83 63.9
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 4.2e-17 91.3 93 62.4
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 9.5e-17 90.1 84 63.1
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.2e-16 89.7 84 61.9
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 2.8e-16 88.6 85 61.2
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 4.7e-16 87.8 83 62.7
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 6.1e-16 87.4 85 60.0
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 8.0e-16 87.0 83 60.2
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.4e-15 86.3 83 61.4
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.8e-15 85.9 83 59.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.0e-15 85.1 90 58.9
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.2e-15 84.3 85 60.0
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 6.8e-15 84.0 85 58.8
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 6.8e-15 84.0 83 60.2
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 8.8e-15 83.6 84 64.3
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.5e-14 82.8 84 57.1
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 2.0e-14 82.4 84 64.3
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.0e-14 82.4 76 61.8
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 9.8e-14 80.1 84 60.7
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 9.8e-14 80.1 83 55.4
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.7e-13 79.3 78 61.5
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 1.7e-13 79.3 85 57.6
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 4.9e-13 77.8 90 52.2
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 6.3e-13 77.4 84 58.3
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 8.3e-13 77.0 83 56.6
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 1.4e-12 76.3 84 58.3
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.8e-12 75.9 83 55.4
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 3.1e-12 75.1 83 54.2
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 5.4e-12 74.3 84 53.6
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 9.2e-12 73.6 109 45.9
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 9.2e-12 73.6 84 54.8
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 9.2e-12 73.6 84 54.8
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.6e-11 72.8 109 47.7
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.0e-11 72.4 88 52.3
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.3e-10 69.7 84 53.6
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.3e-10 69.7 101 50.5
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 2.3e-10 68.9 103 46.6
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 2.9e-10 68.6 120 40.0
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 5.0e-10 67.8 84 50.0
Carub.0006s1188 Capsella rubella HOM05D007429 ORTHO05D003505 6.6e-10 67.4 50 72.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 6.6e-10 67.4 98 46.9
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 8.6e-10 67.0 111 47.7
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 8.6e-10 67.0 84 54.8
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 8.6e-10 67.0 102 49.0
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.1e-09 66.6 40 82.5
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.1e-09 66.6 102 47.1
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 3.3e-09 65.1 84 54.8
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 3.3e-09 65.1 93 49.5
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 4.3e-09 64.7 101 45.5
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.1e-08 62.4 108 44.4
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.1e-08 62.4 106 43.4
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 2.8e-08 62.0 98 46.9
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.8e-08 62.0 107 44.9
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 2.8e-08 62.0 40 80.0
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.6e-08 61.6 40 80.0
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.0e-07 60.1 81 49.4
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.0e-07 60.1 99 47.5
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.0e-07 60.1 97 47.4
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.8e-07 59.3 83 47.0
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.8e-07 59.3 88 46.6
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.3e-07 58.9 95 46.3
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 4.0e-07 58.2 123 41.5
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 5.2e-07 57.8 94 43.6
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 5.2e-07 57.8 94 43.6
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 6.8e-07 57.4 90 45.6
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.8e-07 57.4 97 43.3
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 1.2e-06 56.6 51 62.7
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.2e-06 56.6 66 60.6
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.5e-06 56.2 96 41.7
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.5e-06 56.2 98 43.9
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.6e-06 55.5 95 44.2
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.6e-06 55.5 115 42.6
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.4e-06 55.1 96 41.7
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 5.7e-06 54.3 91 44.0
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 7.5e-06 53.9 91 40.7
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 9.8e-06 53.5 106 40.6


User provided reference genes

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